Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.7e-87 325.9 153 100.0
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 4.8e-74 281.2 136 94.9
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 1.2e-72 276.6 136 94.1
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 5.0e-71 271.2 136 91.9
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 2.3e-68 262.3 135 88.9
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 6.7e-68 260.8 136 88.2
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 8.8e-68 260.4 136 86.0
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 2.6e-67 258.8 136 88.2
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 5.7e-67 257.7 136 86.8
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 7.4e-67 257.3 136 86.0
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 1.7e-66 256.1 136 85.3
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 2.2e-66 255.8 138 84.1
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 2.2e-66 255.8 136 84.6
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 2.8e-66 255.4 136 85.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 2.8e-66 255.4 136 85.3
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 3.7e-66 255.0 136 84.6
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 6.3e-66 254.2 136 84.6
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 6.3e-66 254.2 136 83.8
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 8.2e-66 253.8 136 84.6
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 8.2e-66 253.8 136 84.6
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 1.1e-65 253.4 136 83.1
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 1.1e-65 253.4 138 81.9
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 1.1e-65 253.4 136 83.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 1.8e-65 252.7 136 83.8
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 1.8e-65 252.7 136 83.8
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 1.8e-65 252.7 136 83.1
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 2.4e-65 252.3 136 83.8
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 2.4e-65 252.3 136 83.1
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 3.1e-65 251.9 138 83.3
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 3.1e-65 251.9 136 84.6
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 5.3e-65 251.1 136 85.3
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 7.0e-65 250.8 136 81.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 7.0e-65 250.8 136 83.1
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 9.1e-65 250.4 136 83.1
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 9.1e-65 250.4 136 81.6
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 9.1e-65 250.4 136 83.1
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 1.6e-64 249.6 136 82.4
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 1.6e-64 249.6 136 83.8
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 2.0e-64 249.2 136 82.4
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 2.0e-64 249.2 136 83.8
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 2.0e-64 249.2 136 82.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 2.6e-64 248.8 136 80.9
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 2.6e-64 248.8 136 83.8
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 2.6e-64 248.8 136 83.1
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 3.5e-64 248.4 137 80.3
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 3.5e-64 248.4 136 83.1
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 3.5e-64 248.4 136 83.8
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 3.5e-64 248.4 136 83.8
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 3.5e-64 248.4 136 81.6
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 5.9e-64 247.7 136 81.6
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 7.7e-64 247.3 136 82.4
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 1.0e-63 246.9 135 83.0
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.3e-63 246.5 136 81.6
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 1.7e-63 246.1 136 82.4
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.7e-63 246.1 136 82.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 1.7e-63 246.1 136 80.9
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 2.2e-63 245.7 136 81.6
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 2.2e-63 245.7 136 80.1
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 2.2e-63 245.7 136 80.1
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 2.2e-63 245.7 136 80.1
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.2e-63 245.7 136 80.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.2e-63 245.7 136 80.9
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 2.9e-63 245.4 136 80.9
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 2.9e-63 245.4 136 80.9
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 2.9e-63 245.4 132 83.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 3.8e-63 245.0 136 82.4
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 3.8e-63 245.0 132 83.3
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 5.0e-63 244.6 136 80.9
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 6.5e-63 244.2 136 80.9
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 6.5e-63 244.2 136 82.4
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 6.5e-63 244.2 136 80.1
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 8.5e-63 243.8 136 80.1
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 8.5e-63 243.8 136 80.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 8.5e-63 243.8 136 80.1
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 8.5e-63 243.8 136 80.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 8.5e-63 243.8 136 80.1
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 1.1e-62 243.4 136 80.1
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 1.1e-62 243.4 136 80.9
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 1.1e-62 243.4 132 84.1
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.5e-62 243.0 132 81.8
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 1.5e-62 243.0 136 80.9
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 1.5e-62 243.0 136 80.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.5e-62 243.0 139 79.1
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 1.9e-62 242.7 136 79.4
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 1.9e-62 242.7 136 79.4
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 2.5e-62 242.3 137 78.8
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 2.5e-62 242.3 136 79.4
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 2.5e-62 242.3 136 79.4
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 3.2e-62 241.9 136 78.7
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 4.2e-62 241.5 136 78.7
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 4.2e-62 241.5 136 78.7
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 4.2e-62 241.5 136 78.7
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 4.2e-62 241.5 136 78.7
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 4.2e-62 241.5 136 78.7
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 4.2e-62 241.5 136 78.7
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 4.2e-62 241.5 136 78.7
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 4.2e-62 241.5 136 79.4
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 7.2e-62 240.7 137 78.1
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 7.2e-62 240.7 136 80.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 9.4e-62 240.4 136 78.7
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 1.2e-61 240.0 136 79.4
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 1.2e-61 240.0 138 77.5
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 1.6e-61 239.6 136 80.1
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 2.1e-61 239.2 136 78.7
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 4.7e-61 238.0 137 78.1
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 4.7e-61 238.0 137 78.1
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 6.1e-61 237.7 135 77.8
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 1.0e-60 236.9 140 77.1
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 1.0e-60 236.9 137 77.4
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 1.0e-60 236.9 136 77.9
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 1.4e-60 236.5 136 80.1
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 3.0e-60 235.3 139 77.0
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 3.0e-60 235.3 136 79.4
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 3.0e-60 235.3 138 76.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 5.2e-60 234.6 137 76.6
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.5e-59 233.0 127 81.9
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 9.7e-59 230.3 129 80.6
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 6.3e-58 227.6 136 74.3
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 6.3e-58 227.6 136 74.3
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.1e-57 226.9 136 75.0
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.7e-55 219.5 132 75.8
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 3.0e-52 208.8 132 69.7
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 4.0e-52 208.4 133 72.2
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.7e-51 204.5 132 66.7
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.7e-51 204.5 132 66.7
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 1.3e-50 203.4 130 66.2
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.2e-46 188.3 108 76.9
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 4.7e-45 184.9 136 68.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.0e-28 130.6 74 82.4
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.9e-25 119.8 80 63.8
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.9e-22 109.8 66 69.7
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.5e-22 109.4 66 75.8
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.4e-20 103.6 55 80.0
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 7.3e-14 81.3 49 71.4
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.5e-06 57.0 39 66.7


User provided reference genes

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