Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 5.6e-98 360.9 178 100.0
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 2.4e-77 292.4 178 84.3
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 2.4e-77 292.4 182 82.4
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 5.2e-72 274.6 166 83.7
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 2.4e-69 265.8 164 84.1
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 5.1e-67 258.1 167 79.0
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 1.4e-64 250.0 162 80.9
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 4.0e-64 248.4 161 78.3
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 4.9e-62 241.5 170 71.8
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 2.1e-60 236.1 166 72.3
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 2.3e-59 232.6 166 72.3
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 5.1e-59 231.5 167 72.5
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 2.5e-58 229.2 178 64.6
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 3.3e-58 228.8 176 66.5
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 5.6e-58 228.0 178 64.6
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 1.6e-57 226.5 164 67.7
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 1.6e-57 226.5 178 65.2
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 4.8e-57 224.9 177 66.7
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 6.2e-57 224.6 180 68.3
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 8.1e-57 224.2 169 66.9
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 1.8e-56 223.0 173 65.3
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 5.3e-56 221.5 133 83.5
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 5.3e-56 221.5 165 67.9
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 6.9e-56 221.1 161 66.5
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 6.9e-56 221.1 181 63.0
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 9.0e-56 220.7 160 68.8
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.2e-55 220.3 170 65.9
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 1.2e-55 220.3 170 65.9
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 1.5e-55 219.9 168 66.1
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 2.0e-55 219.5 167 68.9
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.0e-55 219.5 160 68.8
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 2.0e-55 219.5 169 64.5
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 7.6e-55 217.6 166 66.9
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 9.9e-55 217.2 181 65.2
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 9.9e-55 217.2 160 67.5
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 1.3e-54 216.9 181 63.0
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 3.8e-54 215.3 180 64.4
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 1.1e-53 213.8 142 73.9
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 2.4e-53 212.6 164 63.4
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 6.0e-52 208.0 199 58.8
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 1.3e-51 206.8 183 59.6
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 3.0e-51 205.7 164 65.2
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 5.1e-51 204.9 136 74.3
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 5.1e-51 204.9 136 74.3
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 6.7e-51 204.5 176 60.2
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 8.7e-51 204.1 139 71.2
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 1.1e-50 203.8 167 60.5
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 3.3e-50 202.2 174 59.8
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 4.3e-50 201.8 180 58.9
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 7.4e-50 201.1 151 65.6
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 4.8e-49 198.4 158 61.4
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 1.8e-48 196.4 137 66.4
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 3.1e-48 195.7 204 52.0
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 6.9e-48 194.5 129 71.3
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 2.0e-47 193.0 183 63.4
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 2.6e-47 192.6 158 58.9
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 9.9e-47 190.7 145 60.7
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 1.7e-46 189.9 151 62.9
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 2.9e-46 189.1 160 60.0
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 6.4e-46 188.0 180 54.4
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 1.1e-45 187.2 149 59.7
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 3.2e-45 185.7 190 52.6
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 3.2e-45 185.7 169 56.2
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 4.2e-45 185.3 171 57.3
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.1e-44 183.0 181 56.9
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 4.6e-44 181.8 178 57.3
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 1.0e-43 180.6 149 61.7
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 2.3e-43 179.5 183 55.2
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 4.3e-42 175.3 168 56.0
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 5.6e-42 174.9 177 54.8
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 9.6e-42 174.1 203 48.8
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 2.1e-41 172.9 140 62.9
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 2.8e-41 172.6 135 63.7
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 1.1e-40 170.6 134 56.7
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 2.4e-40 169.5 140 61.4
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 1.2e-39 167.2 172 52.9
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 1.2e-39 167.2 165 55.2
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 2.0e-39 166.4 150 58.7
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 2.6e-39 166.0 166 53.6
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 7.6e-39 164.5 161 54.0
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 7.6e-39 164.5 161 54.0
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 1.0e-38 164.1 179 48.6
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 1.3e-38 163.7 136 60.3
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 6.5e-38 161.4 109 72.5
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 1.4e-37 160.2 141 55.3
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 7.1e-37 157.9 106 73.6
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 5.1e-35 151.8 124 57.3
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 3.3e-34 149.1 119 60.5
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 1.3e-33 147.1 111 66.7
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 2.6e-31 139.4 110 66.4
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 5.1e-27 125.2 87 69.0
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 1.1e-24 117.5 76 75.0
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 3.1e-24 115.9 85 69.4
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 4.1e-24 115.5 89 67.4
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 7.7e-23 111.3 72 77.8
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 2.2e-22 109.8 83 66.3
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 3.8e-22 109.0 85 64.7
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 3.8e-22 109.0 85 64.7
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 5.0e-22 108.6 127 47.2
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 6.5e-22 108.2 89 61.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 4.7e-20 102.1 70 68.6
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 1.8e-19 100.1 113 38.1
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 6.7e-19 98.2 116 38.8
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 8.8e-19 97.8 88 59.1
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 1.5e-18 97.1 107 36.4
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 2.6e-18 96.3 68 70.6
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 3.3e-18 95.9 60 70.0
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 4.4e-18 95.5 92 53.3
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 7.4e-18 94.7 53 79.2
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 4.8e-17 92.0 160 36.2
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 6.3e-17 91.7 64 64.1
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 6.3e-17 91.7 64 64.1
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 6.9e-16 88.2 88 51.1
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 4.5e-15 85.5 51 72.5
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 2.9e-14 82.8 134 31.3
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 5.5e-13 78.6 52 76.9
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 9.4e-13 77.8 51 76.5
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 1.2e-12 77.4 52 75.0
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 2.0e-07 60.1 50 62.0
arahy.Tifrunner.gnm1.ann1.02S1KF Arachis hypogaea HOM05D003716 ORTHO05D010944 4.5e-07 58.9 32 84.4
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 2.2e-06 56.6 112 33.9


User provided reference genes

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