Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 3.7e-312 1073.9 535 100.0
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 3.3e-263 911.4 503 91.5
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.1e-229 800.0 488 82.4
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.2e-215 753.4 488 78.9
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 2.8e-209 732.3 484 76.7
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 8.9e-208 727.2 486 75.3
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 3.4e-207 725.3 485 76.1
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 6.4e-206 721.1 484 75.0
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 3.5e-204 715.3 490 75.3
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 4.6e-196 688.3 489 72.6
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.5e-194 682.6 487 72.1
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 2.5e-194 682.6 491 71.9
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.6e-193 679.9 487 71.9
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 6.2e-169 598.2 491 63.7
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 6.9e-168 594.7 487 63.4
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 3.4e-167 592.4 489 62.2
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.9e-165 586.6 487 62.6
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 5.4e-165 585.1 488 61.5
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 5.4e-165 585.1 493 62.3
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 2.7e-164 582.8 492 61.4
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 7.9e-164 581.3 487 62.0
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 7.9e-164 581.3 487 62.2
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.3e-163 580.5 488 61.9
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.8e-163 580.1 489 61.8
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.3e-163 579.7 490 61.2
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.1e-162 577.4 493 61.3
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.5e-162 577.0 465 64.5
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.1e-160 570.9 489 60.5
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 2.4e-160 569.7 491 60.5
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 2.4e-160 569.7 488 61.7
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.0e-159 566.6 484 61.2
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 5.8e-159 565.1 487 61.4
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.2e-156 557.4 493 59.6
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.0e-155 554.3 494 60.7
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.8e-155 553.5 487 60.8
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.0e-155 552.7 488 60.9
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 6.7e-155 551.6 490 58.8
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.5e-154 549.7 488 60.7
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 2.5e-154 549.7 492 58.7
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 4.3e-154 548.9 490 58.6
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 5.6e-154 548.5 487 58.5
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 9.6e-154 547.7 482 59.5
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 9.6e-154 547.7 492 59.6
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 2.8e-153 546.2 478 59.8
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.4e-152 543.9 490 59.4
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 1.8e-152 543.5 493 58.6
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 9.0e-152 541.2 489 59.9
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.2e-151 540.8 521 56.0
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 2.2e-150 536.6 486 58.0
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 6.5e-150 535.0 488 58.4
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 3.2e-149 532.7 487 57.5
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 4.2e-149 532.3 490 59.4
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 7.1e-149 531.6 491 59.1
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.6e-148 530.4 495 58.2
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 7.9e-148 528.1 489 58.1
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.3e-147 527.3 489 57.7
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 2.3e-147 526.6 491 58.5
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.0e-147 526.2 487 57.9
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 5.1e-147 525.4 487 56.1
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 8.7e-147 524.6 487 57.7
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 2.5e-146 523.1 511 56.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 3.3e-146 522.7 488 56.1
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 3.3e-146 522.7 487 56.3
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.6e-145 520.4 487 57.3
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 2.8e-145 519.6 491 56.8
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.7e-145 519.2 487 57.7
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.4e-144 517.3 494 57.1
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 1.8e-144 516.9 487 55.6
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 5.9e-143 511.9 488 56.1
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 1.3e-142 510.8 531 54.0
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.3e-142 510.8 487 55.4
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 2.9e-142 509.6 506 55.9
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 3.8e-142 509.2 488 58.4
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 5.0e-142 508.8 487 54.8
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 5.5e-141 505.4 490 56.3
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 5.5e-141 505.4 491 56.0
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 5.5e-141 505.4 490 56.1
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.2e-140 504.2 491 56.4
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.7e-140 503.1 522 54.2
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.6e-140 502.7 486 55.6
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 6.1e-140 501.9 490 55.9
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 3.0e-139 499.6 488 54.9
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 3.9e-139 499.2 489 54.0
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.3e-137 494.2 436 59.6
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 6.3e-137 491.9 483 56.7
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 8.2e-137 491.5 488 55.5
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 5.3e-136 488.8 495 52.7
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.3e-134 484.2 486 52.1
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.9e-134 483.0 490 52.2
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 8.5e-134 481.5 487 52.4
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.1e-130 471.1 488 50.6
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 4.8e-129 465.7 484 51.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 5.9e-127 458.8 479 51.6
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 1.6e-124 450.7 531 47.1
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 6.1e-124 448.7 487 50.9
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 3.3e-122 443.0 450 52.4
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.1e-120 438.0 486 50.2
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 5.3e-120 435.6 509 49.3
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 7.0e-120 435.3 505 46.3
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 7.0e-120 435.3 505 46.3
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.2e-119 434.5 527 45.2
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 2.0e-119 433.7 487 49.3
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 3.1e-112 409.8 485 45.6
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 9.1e-112 408.3 485 47.4
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 2.1e-100 370.5 489 43.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 6.8e-99 365.5 511 42.3
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.7e-97 360.9 494 43.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 5.8e-90 335.9 365 49.9
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 5.8e-90 335.9 501 37.9
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.5e-85 321.2 280 57.1
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 3.9e-78 296.6 266 57.9
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.9e-77 294.3 464 38.4
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 5.6e-77 292.7 218 67.9
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 2.0e-66 257.7 369 40.1
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.2e-56 223.8 266 50.0
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 3.5e-55 220.3 144 76.4
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 9.0e-51 205.7 269 46.5
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 9.0e-51 205.7 658 27.4
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.4e-48 197.6 164 63.4
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.8e-43 181.4 225 44.4
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.6e-39 166.8 125 68.8
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 4.6e-39 166.8 485 28.9
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 6.7e-38 162.9 295 34.6
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 3.1e-35 154.1 97 75.3
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 7.4e-29 132.9 164 44.5
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.3e-28 132.1 233 35.2
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.4e-26 124.0 158 48.1
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 8.5e-25 119.4 162 42.0
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.8e-22 111.7 127 45.7
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 5.1e-22 110.2 81 71.6
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 6.7e-22 109.8 473 24.9
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 1.2e-18 99.0 145 36.6
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 2.2e-17 94.7 131 42.7
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 7.2e-16 89.7 127 45.7
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 4.7e-15 87.0 56 73.2
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 1.8e-14 85.1 65 69.2
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 5.7e-13 80.1 163 31.3
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 2.4e-11 74.7 75 58.7
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 9.1e-11 72.8 159 32.1
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.6e-10 71.2 49 61.2
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 5.0e-09 67.0 114 43.0
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 4.2e-08 63.9 51 56.9


User provided reference genes

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