Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 7.2e-91 337.4 195 100.0
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 2.3e-76 289.3 195 83.6
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 1.2e-61 240.4 198 72.7
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 2.5e-59 232.6 205 67.3
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 2.5e-51 206.1 195 66.2
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 3.6e-50 202.2 211 60.7
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 1.1e-46 190.7 197 59.9
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 5.6e-43 178.3 195 59.5
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 6.2e-42 174.9 201 56.2
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 5.2e-41 171.8 213 53.5
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 1.1e-38 164.1 206 52.9
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 1.9e-35 153.3 146 62.3
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 4.8e-26 122.1 175 48.6
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 5.3e-25 118.6 134 54.5
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 1.5e-24 117.1 148 51.4
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 3.4e-24 115.9 149 51.0
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 7.6e-24 114.8 189 43.4
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 1.7e-23 113.6 205 43.4
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 1.7e-23 113.6 170 48.8
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 8.4e-23 111.3 181 45.9
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 8.4e-23 111.3 181 45.9
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 8.4e-23 111.3 167 48.5
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 8.4e-23 111.3 125 51.2
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.1e-22 110.9 167 48.5
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.9e-22 110.2 157 48.4
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 3.2e-22 109.4 169 48.5
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 4.2e-22 109.0 136 53.7
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 5.4e-22 108.6 182 43.4
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 9.3e-22 107.8 176 44.9
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 9.3e-22 107.8 157 47.8
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 1.2e-21 107.5 124 53.2
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 1.6e-21 107.1 170 44.7
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 2.1e-21 106.7 171 49.1
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 3.5e-21 105.9 120 54.2
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 7.9e-21 104.8 197 41.6
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 1.0e-20 104.4 187 46.5
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 1.0e-20 104.4 173 43.9
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 1.3e-20 104.0 183 42.6
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 6.7e-20 101.7 119 52.1
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 8.7e-20 101.3 146 47.3
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 8.7e-20 101.3 121 52.1
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 1.9e-19 100.1 143 51.0
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 5.6e-19 98.6 164 40.2
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 7.4e-19 98.2 121 47.9
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 2.1e-18 96.7 173 41.6
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 4.8e-18 95.5 126 49.2
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 6.2e-18 95.1 126 49.2
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 8.1e-18 94.7 172 40.1
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 8.1e-18 94.7 120 49.2
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 1.8e-17 93.6 125 49.6
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 3.1e-17 92.8 180 38.9
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 1.2e-16 90.9 121 47.1
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 2.6e-16 89.7 137 43.1
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 4.9e-15 85.5 118 47.5
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 6.4e-15 85.1 140 45.7
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 6.4e-15 85.1 115 47.0
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 1.1e-14 84.3 132 42.4
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 1.1e-14 84.3 128 43.8
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 2.4e-14 83.2 117 48.7
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 2.4e-14 83.2 182 36.3
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 4.2e-14 82.4 128 43.0
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 2.7e-13 79.7 120 43.3
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 4.6e-13 79.0 134 43.3
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 1.8e-12 77.0 137 41.6
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 1.3e-10 70.9 120 41.7
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 6.2e-10 68.6 127 38.6
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 8.2e-10 68.2 172 41.3
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 3.1e-09 66.2 123 42.3
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 3.1e-09 66.2 67 53.7
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 4.0e-09 65.9 151 34.4
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 1.5e-08 63.9 122 41.0
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 1.5e-08 63.9 158 36.7
A04p34460 Brassica napus HOM05D002476 ORTHO05D002652 2.6e-08 63.2 119 39.5
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 2.6e-08 63.2 119 39.5
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 2.6e-08 63.2 81 49.4
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 3.4e-08 62.8 123 40.7
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 7.6e-08 61.6 132 37.9
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 1.0e-07 61.2 117 37.6
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 1.0e-07 61.2 120 39.2
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 1.3e-07 60.8 125 39.2
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 1.3e-07 60.8 116 36.2
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 1.3e-07 60.8 116 36.2
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 1.3e-07 60.8 131 38.9
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 2.9e-07 59.7 130 38.5
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 2.9e-07 59.7 132 37.1
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 2.9e-07 59.7 131 36.6
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 3.8e-07 59.3 124 38.7
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 3.8e-07 59.3 118 39.0
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 3.8e-07 59.3 81 48.1
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 4.9e-07 58.9 120 36.7
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 6.5e-07 58.5 124 37.9
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 6.5e-07 58.5 124 37.9
Thhalv10008123m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 6.5e-07 58.5 131 32.8
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 8.4e-07 58.2 124 38.7
C05p00710 Brassica napus HOM05D002476 ORTHO05D002652 8.4e-07 58.2 130 36.2
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 1.1e-06 57.8 124 36.3
THA.LOC104825884 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.1e-06 57.8 159 32.1
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 1.4e-06 57.4 125 37.6
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 1.4e-06 57.4 137 35.8
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 1.4e-06 57.4 130 33.1
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 1.4e-06 57.4 119 38.7
C04p72220 Brassica napus HOM05D002476 ORTHO05D002652 1.9e-06 57.0 119 36.1
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 2.5e-06 56.6 133 33.8
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 2.5e-06 56.6 130 33.1
Manes.01G244700 Manihot esculenta HOM05D002476 ORTHO05D002652 4.2e-06 55.8 141 31.9
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 5.5e-06 55.5 125 36.0
ATR0758G001 Amborella trichopoda HOM05D002476 ORTHO05D010087 7.1e-06 55.1 72 44.4
THA.LOC104817374 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 9.3e-06 54.7 152 32.9
TPR.G24528 Trifolium pratense HOM05D002476 ORTHO05D002652 9.3e-06 54.7 149 34.2


User provided reference genes

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