Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.0e-217 760.0 453 100.0
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.1e-154 549.7 462 81.2
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.0e-148 529.3 455 70.5
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 5.0e-127 458.8 464 61.4
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.4e-121 440.7 470 62.6
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 6.7e-116 421.8 415 68.9
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 4.1e-113 412.5 458 58.5
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.5e-110 404.1 490 58.2
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 6.1e-109 398.7 467 58.9
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.0e-108 397.9 426 61.3
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 2.3e-108 396.7 482 54.6
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 4.0e-108 396.0 459 55.6
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.0e-107 393.7 499 58.9
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.3e-106 391.0 461 56.2
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 2.2e-106 390.2 501 53.7
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.8e-106 389.0 520 54.2
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.4e-105 387.5 527 55.0
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 2.4e-105 386.7 480 55.2
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.4e-105 386.7 468 55.6
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 3.5e-104 382.9 360 63.1
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.3e-103 380.9 503 53.9
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.5e-102 376.7 453 54.1
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 4.2e-102 375.9 325 67.1
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.2e-102 375.2 462 54.1
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 6.1e-101 372.1 489 52.1
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.8e-100 370.5 452 55.5
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.8e-100 370.5 245 74.7
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 5.2e-100 369.0 501 53.5
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 6.8e-100 368.6 245 75.5
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 8.9e-100 368.2 478 54.8
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 8.9e-100 368.2 492 51.0
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.0e-99 367.1 463 52.5
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.0e-99 367.1 470 54.9
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 4.4e-99 365.9 331 64.4
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 5.7e-99 365.5 477 54.1
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 7.5e-99 365.2 349 61.9
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.2e-98 363.6 476 52.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 4.9e-98 362.5 467 55.5
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.4e-97 360.9 247 75.7
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 2.4e-97 360.1 245 73.5
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 7.0e-97 358.6 245 73.1
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 7.0e-97 358.6 467 54.4
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 7.0e-97 358.6 245 73.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.2e-96 357.8 261 69.3
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.6e-96 357.5 511 48.9
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.6e-96 357.5 245 72.7
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.0e-96 357.1 463 51.8
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.7e-96 356.7 467 54.4
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.5e-96 355.9 467 54.2
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 7.8e-96 355.1 464 51.1
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.3e-95 354.4 478 52.7
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.7e-95 354.0 238 73.5
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.7e-95 354.0 488 52.0
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 2.9e-95 353.2 291 64.3
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 5.0e-95 352.4 246 72.4
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 5.0e-95 352.4 246 72.4
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 6.6e-95 352.1 465 52.0
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 8.6e-95 351.7 462 55.6
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.5e-94 350.9 246 72.0
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.5e-94 350.9 459 53.2
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 2.5e-94 350.1 471 49.9
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 2.5e-94 350.1 472 55.1
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.3e-94 349.7 457 49.2
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 4.3e-94 349.4 482 51.2
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 4.3e-94 349.4 384 54.7
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 7.3e-94 348.6 458 49.1
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 9.5e-94 348.2 506 55.7
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 9.5e-94 348.2 480 51.7
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.2e-93 347.8 455 49.0
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.6e-93 347.4 465 52.5
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 8.0e-93 345.1 395 52.7
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.8e-92 344.0 474 48.5
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.1e-92 343.2 460 57.4
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 5.2e-92 342.4 245 71.8
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 6.8e-92 342.0 475 47.4
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.2e-91 341.3 453 49.9
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 3.4e-91 339.7 505 51.3
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 7.5e-91 338.6 478 47.5
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 7.5e-91 338.6 467 49.0
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.7e-90 337.4 240 70.0
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 1.7e-90 337.4 510 51.4
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.1e-89 334.7 477 49.7
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.1e-89 334.7 500 53.2
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.9e-89 334.0 477 49.5
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 3.2e-89 333.2 477 47.0
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 4.1e-89 332.8 384 58.9
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 5.4e-89 332.4 457 51.6
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 9.2e-89 331.6 480 50.2
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.0e-88 330.5 477 51.4
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 3.5e-88 329.7 478 46.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 6.0e-88 328.9 502 48.2
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.0e-87 328.2 474 53.0
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.3e-87 327.8 247 70.4
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.7e-87 327.4 406 50.5
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 8.6e-87 325.1 243 67.1
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 2.5e-86 323.6 456 52.9
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 7.3e-86 322.0 474 50.2
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 8.0e-85 318.5 317 56.5
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.8e-84 317.4 436 47.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 3.1e-84 316.6 388 53.4
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 3.1e-84 316.6 340 57.4
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 5.2e-84 315.8 343 57.7
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 6.8e-84 315.5 249 64.3
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 8.9e-84 315.1 478 50.0
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.2e-83 314.7 485 50.3
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 9.8e-83 311.6 462 49.1
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.7e-82 309.7 449 51.0
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 4.9e-82 309.3 388 52.3
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.9e-81 307.4 505 48.5
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.2e-80 304.7 506 43.7
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.6e-80 304.3 395 49.6
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 6.0e-80 302.4 455 46.6
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 7.8e-80 302.0 361 47.9
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 3.9e-79 299.7 335 52.5
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.7e-74 284.3 213 67.1
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 6.0e-72 275.8 289 50.5
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.2e-69 268.1 221 57.5
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 5.4e-65 252.7 239 54.0
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 3.3e-54 216.9 243 46.5
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.8e-47 194.5 248 45.2
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 2.3e-47 194.1 249 44.2
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 9.6e-46 188.7 247 40.1
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 8.1e-45 185.7 225 42.2
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 3.8e-42 176.8 112 73.2
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.6e-40 171.4 291 40.5
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 8.7e-39 165.6 88 86.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.5e-38 164.9 247 38.9
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 1.4e-36 158.3 226 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 8.4e-34 149.1 243 35.8
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.2e-29 134.4 246 34.1
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.2e-29 134.4 227 37.9
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.4e-28 131.0 218 32.1
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 3.4e-27 127.1 302 45.0
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.5e-27 126.7 350 37.1
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.1e-25 122.1 226 31.9
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 7.9e-24 115.9 160 42.5
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.0e-23 115.5 245 29.4
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 3.9e-23 113.6 220 35.9
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 2.0e-22 111.3 280 42.9
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 5.0e-18 96.7 243 33.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.5e-14 85.1 131 40.5
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 8.2e-13 79.3 82 47.6
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.1e-12 79.0 211 29.9
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.8e-12 78.2 148 45.3
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 2.4e-12 77.8 110 42.7
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 4.1e-12 77.0 97 43.3
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 7.7e-11 72.8 184 32.6
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.9e-09 68.2 42 64.3
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.9e-09 68.2 54 48.1
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 5.5e-09 66.6 161 33.5
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.4e-07 62.0 130 33.8


User provided reference genes

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