Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1506.1 731 100.0
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 0.0e+00 1340.9 709 92.5
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 0.0e+00 1232.6 716 84.2
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 0.0e+00 1209.1 728 81.6
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 0.0e+00 1131.7 709 78.0
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 0.0e+00 1128.6 718 78.1
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 0.0e+00 1106.3 670 80.1
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 0.0e+00 1099.7 706 76.1
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 0.0e+00 1097.8 673 79.0
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 0.0e+00 1095.9 701 75.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.8e-291 1005.7 675 72.0
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 3.9e-291 1004.6 661 73.5
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 3.3e-290 1001.5 662 73.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.3e-281 973.0 723 67.1
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.0e-278 961.1 668 69.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.6e-271 939.5 696 65.4
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 5.0e-270 934.5 730 63.7
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.2e-269 931.8 712 63.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.0e-267 924.9 718 63.1
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.4e-266 921.8 784 61.5
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.7e-265 919.5 714 62.7
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.3e-265 917.1 668 66.3
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.1e-264 915.2 683 66.3
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.5e-263 911.8 717 62.8
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 3.5e-263 911.8 724 62.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 8.5e-262 907.1 712 63.6
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.2e-261 904.8 731 63.2
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.7e-260 901.4 680 63.5
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.1e-260 901.0 761 60.1
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.0e-258 896.0 715 62.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.6e-258 895.6 717 61.9
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 4.4e-258 894.8 714 62.6
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 4.9e-257 891.3 709 62.5
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.3e-257 891.0 713 61.4
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.3e-254 883.2 722 61.1
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 5.0e-254 881.3 725 59.9
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 4.3e-253 878.2 722 59.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 6.1e-252 874.4 705 63.8
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.4e-251 873.2 713 62.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.0e-250 869.4 713 60.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.5e-250 867.5 722 58.7
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.4e-248 863.2 720 60.0
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.8e-248 862.8 661 63.7
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.8e-248 862.8 729 59.1
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.2e-248 860.5 720 60.1
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 5.9e-247 857.8 713 59.9
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.3e-246 856.7 669 62.8
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.0e-246 855.5 732 57.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 5.0e-246 854.7 666 62.3
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 5.0e-246 854.7 698 61.2
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 6.6e-246 854.4 698 61.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.5e-245 853.2 740 58.5
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.5e-245 853.2 668 62.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 4.3e-245 851.7 705 60.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.3e-245 851.7 684 61.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.3e-245 850.9 668 62.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.0e-243 847.0 734 56.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.8e-243 846.3 705 62.3
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-242 843.6 753 57.4
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.6e-242 842.4 677 61.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.8e-242 841.3 712 58.8
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 9.8e-242 840.5 734 56.3
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.4e-240 835.9 667 61.3
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.4e-240 835.9 602 66.3
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 3.2e-240 835.5 706 57.2
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 4.1e-240 835.1 698 59.3
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.2e-239 833.6 698 59.7
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.0e-239 832.8 713 57.9
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.0e-238 830.5 694 59.9
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.0e-238 828.2 687 59.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.6e-238 827.8 687 59.5
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.5e-237 825.9 656 64.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.2e-236 823.5 666 60.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 5.2e-235 818.1 660 60.5
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 6.4e-233 811.2 656 63.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.1e-232 810.4 709 56.4
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 7.8e-231 804.3 591 65.8
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.7e-230 803.1 669 59.0
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.7e-230 803.1 709 57.0
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 3.9e-230 802.0 880 49.8
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.5e-229 799.3 685 57.7
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.3e-229 798.9 658 59.0
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.3e-229 798.5 614 63.7
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 5.6e-229 798.1 667 59.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.6e-228 795.4 624 61.5
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.4e-225 784.6 688 55.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.1e-224 783.9 703 54.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.4e-224 783.5 656 57.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.5e-223 778.9 656 57.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.3e-222 776.9 676 55.5
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 6.6e-222 774.6 672 56.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 4.3e-221 771.9 655 56.2
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.8e-220 769.2 658 57.0
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 6.2e-220 768.1 679 56.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.2e-220 768.1 692 54.9
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.2e-218 763.8 673 55.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.5e-218 763.5 672 56.7
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 7.6e-218 761.1 673 55.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 7.6e-218 761.1 673 55.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 9.9e-218 760.8 676 55.0
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.3e-217 760.4 669 55.6
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.2e-217 759.6 711 53.6
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.9e-216 756.5 658 55.2
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.1e-216 754.6 655 55.3
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 9.3e-216 754.2 706 53.4
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.1e-214 748.4 729 53.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 3.3e-213 745.7 716 52.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.3e-212 743.8 725 52.0
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.8e-212 742.7 708 51.6
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.0e-211 738.8 662 53.3
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.3e-211 738.4 658 54.1
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.9e-209 732.6 674 56.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.4e-208 729.6 588 60.9
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.6e-207 726.9 659 53.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 4.6e-207 725.3 728 50.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.3e-206 723.0 627 56.0
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.6e-205 718.4 663 55.2
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 3.1e-203 712.6 667 51.9
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.5e-200 701.8 684 52.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 7.9e-199 698.0 661 53.9
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 6.7e-198 694.9 532 64.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.4e-195 686.4 742 47.3
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 7.6e-194 681.4 709 50.1
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.9e-193 679.5 672 53.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 8.4e-193 677.9 690 50.6
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.9e-179 631.7 661 48.7
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.9e-176 623.6 672 47.9
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.5e-176 623.2 555 57.1
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 4.2e-176 622.5 524 58.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.1e-174 615.5 701 48.2
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 9.7e-173 611.3 698 48.3
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 5.0e-153 545.8 538 50.2
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.1e-139 501.5 386 65.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 6.1e-135 485.7 344 65.4
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.7e-130 470.3 422 51.4
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 7.5e-117 425.6 394 54.3
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.9e-116 423.7 298 65.4
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 9.6e-104 382.1 231 75.8
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 6.2e-103 379.4 392 49.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 6.9e-102 375.9 405 44.7
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.2e-99 367.1 448 44.2
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.1e-91 342.0 560 35.2
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 3.0e-89 334.0 312 48.7
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.5e-80 305.1 576 32.8
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.8e-79 300.8 538 34.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.1e-70 272.3 324 47.8
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.8e-65 255.0 207 64.7
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.0e-57 229.2 206 56.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.8e-55 221.1 137 69.3
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.8e-54 218.4 213 52.1
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 2.0e-53 214.9 239 48.5
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 4.4e-48 197.2 223 46.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.8e-44 184.1 127 65.4
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 6.5e-44 183.3 133 66.2
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 9.4e-43 179.5 115 67.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 6.3e-39 166.8 178 49.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-38 164.9 99 76.8
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-38 164.9 99 76.8
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-38 164.9 99 76.8
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.2e-37 162.5 370 31.4
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 4.5e-37 160.6 207 45.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 5.5e-35 153.7 144 56.2
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 7.2e-35 153.3 262 38.5
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.7e-29 134.8 241 34.9
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 7.5e-24 116.7 222 36.5
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.1e-22 112.8 241 29.9
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.6e-19 100.5 200 35.0
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.1e-18 98.6 59 71.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.8e-17 95.5 69 65.2
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.9e-17 93.2 119 40.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-12 79.3 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-12 79.3 48 66.7
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.3e-12 79.3 54 68.5


User provided reference genes

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