Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1689.9 864 100.0
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1543.1 866 90.2
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1486.9 869 86.0
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 0.0e+00 1434.1 859 84.2
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1376.3 885 79.1
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1367.4 876 79.8
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 0.0e+00 1344.7 878 79.6
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 0.0e+00 1340.9 888 78.9
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 0.0e+00 1328.9 846 79.1
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1322.0 895 75.0
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1302.7 824 77.4
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1299.6 824 77.1
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1196.0 879 68.9
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1192.9 819 71.9
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1190.3 819 71.9
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1189.1 827 72.1
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1188.7 878 67.7
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1187.2 871 68.2
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1163.3 874 68.4
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1162.9 825 70.4
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1160.6 869 67.9
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1158.3 860 68.3
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1158.3 818 69.9
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1157.5 883 66.3
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1155.6 819 69.2
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1153.7 819 69.2
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1152.5 874 65.9
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1152.1 870 66.9
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1149.0 876 68.0
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1148.3 819 68.9
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1145.6 836 68.7
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1143.3 866 67.2
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1139.4 816 68.9
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1134.8 870 65.5
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1133.2 871 65.7
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1130.9 822 69.0
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1129.8 820 67.4
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1124.4 827 66.7
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1124.0 824 67.7
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1120.9 822 67.8
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1119.4 822 67.5
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1118.2 815 67.6
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1116.7 825 67.4
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1114.0 823 67.3
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1109.7 823 67.2
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 0.0e+00 1109.0 817 67.6
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1106.7 820 66.8
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 0.0e+00 1103.6 817 67.2
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 0.0e+00 1097.0 817 66.8
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1094.7 822 66.1
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 0.0e+00 1094.0 752 71.3
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1090.1 817 66.5
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1088.9 874 64.9
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1085.5 820 64.6
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1082.4 819 64.7
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1082.4 796 66.2
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1081.2 867 62.4
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1081.2 818 64.5
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1080.9 853 63.7
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1080.1 824 64.8
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1079.3 823 64.6
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1079.3 824 64.7
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 0.0e+00 1079.3 693 75.8
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 0.0e+00 1076.2 818 64.3
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 5.9e-312 1074.7 821 64.8
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 5.9e-312 1074.7 821 64.8
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 5.9e-312 1073.5 818 64.2
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 1.2e-311 1073.2 821 64.7
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 1.3e-309 1066.2 940 59.4
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 2.2e-309 1065.4 901 61.9
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 6.5e-309 1063.9 864 60.9
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 2.6e-302 1042.0 819 64.0
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 2.6e-302 1042.0 799 65.7
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 8.4e-301 1036.9 841 61.7
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 1.6e-299 1032.7 842 62.5
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 2.1e-299 1032.3 805 64.6
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 3.9e-298 1028.1 805 64.3
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 3.7e-296 1021.5 818 62.6
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 5.3e-295 1017.7 828 63.4
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 5.3e-295 1017.7 839 62.2
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 1.0e-293 1013.4 830 63.7
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.6e-291 1005.0 797 61.5
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 1.5e-289 999.6 828 62.6
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 6.3e-288 994.2 639 74.0
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 5.7e-281 971.1 737 63.8
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 7.4e-281 970.7 809 59.6
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 1.7e-280 969.5 822 61.1
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 7.0e-279 964.1 758 65.0
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 8.5e-277 957.2 696 68.1
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 2.7e-275 952.2 795 58.4
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 4.1e-271 938.3 717 67.1
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 1.2e-270 936.8 798 57.6
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 2.0e-270 936.0 850 58.6
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 6.1e-259 897.9 788 60.2
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 1.3e-248 863.6 653 65.5
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 9.5e-244 847.4 737 61.5
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 8.0e-243 844.3 826 51.0
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 2.3e-237 826.2 834 49.5
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 1.9e-228 796.6 843 48.9
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 1.2e-222 777.3 749 51.4
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 2.9e-200 703.0 751 51.1
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 6.7e-189 665.2 568 54.0
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 8.2e-179 631.7 478 65.9
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 9.4e-175 618.2 470 67.4
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 1.7e-155 554.3 816 39.6
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 3.2e-151 540.0 926 36.4
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 8.9e-141 505.4 553 52.3
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 3.7e-115 420.2 384 54.7
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.1e-114 418.7 298 69.8
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 2.2e-107 394.4 297 67.3
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 3.6e-102 377.1 390 53.3
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 6.2e-94 349.7 248 66.5
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 6.7e-88 329.7 244 65.2
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.9e-87 328.2 197 75.6
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 4.3e-87 327.0 188 78.7
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 2.8e-86 324.3 186 79.0
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 6.0e-81 306.6 217 64.5
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 1.0e-75 289.3 416 38.5
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 1.9e-71 275.0 201 62.2
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 4.4e-47 194.1 147 60.5
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 2.0e-44 185.3 157 52.2
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.9e-26 125.6 192 38.0
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 8.0e-17 93.6 160 40.6
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 2.2e-14 85.5 52 80.8
FvH4_1g28571 Fragaria vesca HOM05D028679 ORTHO05D046132 8.3e-06 57.0 81 48.1
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 8.3e-06 57.0 151 29.8


User provided reference genes

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