Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 8.5e-154 547.0 276 100.0
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 4.4e-142 508.1 273 92.7
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 8.0e-128 460.7 275 84.7
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 1.4e-127 459.9 276 84.1
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 9.8e-126 453.8 276 82.6
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 2.2e-125 452.6 276 81.9
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 6.3e-125 451.1 276 81.2
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 3.1e-124 448.7 276 81.5
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 9.1e-124 447.2 276 80.8
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 5.0e-122 441.4 271 80.8
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 1.4e-116 423.3 283 77.4
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 3.3e-113 412.1 253 81.0
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 5.0e-106 388.3 276 70.3
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.6e-106 387.9 278 70.5
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 1.2e-102 377.1 278 69.4
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.0e-102 376.3 276 65.9
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 4.4e-102 375.2 277 67.9
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.5e-102 374.4 278 68.7
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 7.5e-102 374.4 273 68.9
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.2e-101 372.9 275 68.7
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.9e-101 371.7 277 67.5
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 6.4e-101 371.3 277 68.2
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 1.1e-100 370.5 277 67.1
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 4.1e-100 368.6 278 69.1
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 9.2e-100 367.5 276 66.7
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 2.7e-99 365.9 204 88.2
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 2.7e-99 365.9 274 68.2
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 4.6e-99 365.2 205 86.8
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 6.0e-99 364.8 275 69.1
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 6.0e-99 364.8 253 71.9
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 6.0e-99 364.8 277 65.7
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 3.9e-98 362.1 278 66.5
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.0e-98 361.7 276 66.3
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 5.0e-98 361.7 277 66.1
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.3e-97 358.6 253 70.8
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 7.3e-97 357.8 276 64.5
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.4e-95 353.6 276 65.2
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.4e-95 353.6 276 65.2
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.5e-94 350.1 277 63.5
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 5.8e-94 348.2 277 63.9
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 9.9e-94 347.4 252 69.4
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.7e-93 346.7 273 64.1
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.7e-93 346.7 255 70.2
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 2.2e-93 346.3 207 80.7
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 8.3e-93 344.4 277 63.2
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.4e-92 343.6 276 63.8
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 2.4e-92 342.8 276 64.5
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.4e-92 342.8 271 65.7
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 5.4e-92 341.7 274 62.4
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.2e-91 340.5 234 72.6
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 7.8e-91 337.8 276 62.0
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.0e-90 337.4 276 62.3
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.0e-90 337.4 240 71.7
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.7e-90 336.7 276 60.9
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.7e-90 336.7 245 66.9
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.7e-90 336.7 279 63.1
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 2.3e-90 336.3 272 62.1
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 3.9e-90 335.5 276 61.2
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 5.1e-90 335.1 283 61.5
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 6.6e-90 334.7 215 74.9
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 6.6e-90 334.7 239 68.6
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.1e-89 334.0 276 59.1
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.1e-89 334.0 276 59.1
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 1.1e-89 334.0 224 71.9
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.5e-89 333.6 220 73.2
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 1.9e-89 333.2 277 62.5
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.5e-89 332.8 277 62.8
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.3e-89 332.4 245 67.3
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 7.3e-89 331.3 273 61.5
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 7.3e-89 331.3 243 69.1
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 7.3e-89 331.3 276 60.1
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 1.2e-88 330.5 211 73.5
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.6e-88 330.1 207 74.4
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.6e-88 330.1 276 63.4
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.8e-88 329.3 284 62.0
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 2.8e-88 329.3 239 66.9
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 6.2e-88 328.2 254 65.7
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.1e-87 327.4 234 67.9
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.8e-87 326.6 275 61.1
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.8e-87 326.6 250 65.6
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.4e-87 326.2 240 67.5
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.0e-87 325.5 219 72.6
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 5.2e-87 325.1 255 63.1
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 5.2e-87 325.1 276 61.6
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 5.2e-87 325.1 274 61.7
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 8.9e-87 324.3 234 69.7
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.2e-86 323.9 276 61.6
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.5e-86 323.6 256 63.7
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.0e-86 323.2 276 60.9
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 2.6e-86 322.8 210 74.3
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 3.4e-86 322.4 277 59.6
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 4.4e-86 322.0 221 70.6
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 5.8e-86 321.6 283 59.7
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 9.9e-86 320.9 236 66.9
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.3e-85 320.5 236 66.9
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.7e-85 320.1 214 72.0
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.2e-85 319.7 240 66.2
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 3.8e-85 318.9 214 72.0
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 4.9e-85 318.5 275 59.3
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 4.9e-85 318.5 207 72.5
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 6.4e-85 318.2 247 64.4
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.3e-82 310.5 221 69.7
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.7e-82 310.1 204 74.0
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.6e-80 302.4 205 74.1
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.4e-79 300.4 248 60.1
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 7.6e-78 294.7 196 74.5
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.9e-77 292.7 229 66.8
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.4e-76 290.4 259 60.2
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.6e-75 287.0 252 56.7
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 4.3e-73 278.9 198 68.7
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 5.3e-71 271.9 209 64.1
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.5e-70 270.4 283 54.4
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 2.0e-70 270.0 206 63.1
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.9e-69 266.2 214 60.3
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.4e-68 263.1 213 62.9
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.9e-62 241.1 182 69.8
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 3.2e-60 236.1 226 52.7
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.8e-58 230.3 211 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 2.5e-57 226.5 209 54.1
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 9.6e-57 224.6 200 56.5
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.8e-55 220.3 212 52.8
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 5.8e-54 215.3 199 57.8
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 7.6e-54 214.9 171 64.9
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 1.4e-52 210.7 190 55.8
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.8e-50 203.8 218 46.3
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 8.7e-50 201.4 119 78.2
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 1.6e-43 180.6 228 38.2
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.0e-42 177.9 109 79.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 5.3e-39 165.6 212 41.0
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 3.2e-36 156.4 139 61.9
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.6e-33 146.7 130 60.0
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.0e-30 137.1 106 65.1
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.6e-25 120.2 91 62.6
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 2.4e-23 113.6 88 67.0
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.2e-19 101.3 144 36.8
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 8.3e-16 88.6 107 48.6
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 8.3e-16 88.6 58 74.1
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 4.7e-11 72.8 44 79.5
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 2.2e-08 63.9 246 28.9


User provided reference genes

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