Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 0.0e+00 1239.6 620 100.0
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 0.0e+00 1130.9 613 93.6
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 7.9e-293 1010.0 620 83.2
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.4e-292 1009.2 620 83.5
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 2.5e-270 935.3 633 76.5
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.2e-261 906.4 630 75.9
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.9e-255 885.2 635 73.1
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 2.1e-253 879.0 635 73.4
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 4.9e-250 867.8 625 73.4
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 3.2e-249 865.1 618 72.8
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.0e-247 860.1 620 71.1
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.6e-245 852.8 621 72.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.6e-216 755.0 559 69.8
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 8.1e-213 744.2 637 61.7
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.6e-211 739.2 632 62.5
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 6.4e-210 734.6 625 61.9
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 5.4e-209 731.5 628 62.1
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.2e-208 730.3 629 62.0
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 7.9e-208 727.6 639 61.5
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.8e-207 726.5 625 61.0
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 3.3e-206 722.2 628 60.5
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.5e-203 713.4 628 61.6
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.9e-202 709.1 628 62.1
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.9e-202 709.1 622 62.4
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 4.9e-202 708.4 636 60.7
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 7.1e-201 704.5 648 59.3
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.2e-200 703.7 641 59.8
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.1e-198 697.2 620 61.5
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.5e-198 696.8 640 57.8
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.6e-197 693.3 626 60.1
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 9.0e-196 687.6 665 57.3
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 3.4e-195 685.6 638 58.0
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 2.9e-194 682.6 573 63.9
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.9e-193 679.9 640 59.2
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 9.3e-193 677.6 635 58.9
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 6.1e-192 674.9 610 59.3
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.0e-191 674.1 629 57.9
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 6.7e-191 671.4 634 56.3
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 2.5e-190 669.5 628 57.8
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.2e-189 666.4 633 57.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 4.8e-189 665.2 620 57.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.8e-188 663.3 630 57.9
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 4.1e-188 662.1 626 58.6
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 5.9e-187 658.3 629 57.4
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.4e-185 653.7 611 58.4
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 4.2e-185 652.1 626 54.6
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 6.7e-183 644.8 639 55.1
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 8.8e-183 644.4 626 56.4
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.5e-182 643.7 635 55.6
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 3.3e-182 642.5 625 55.4
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 4.3e-182 642.1 635 55.7
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.7e-182 641.0 682 53.1
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.3e-178 630.6 638 53.8
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.7e-178 630.2 635 54.6
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 3.8e-178 629.0 624 54.0
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 3.8e-178 629.0 636 54.2
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 6.5e-178 628.2 593 58.2
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 2.5e-177 626.3 638 54.2
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.6e-176 623.6 583 59.0
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 2.3e-175 619.8 628 54.6
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.0e-175 619.4 575 59.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.9e-175 619.0 609 54.5
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 8.8e-175 617.8 611 54.3
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 4.1e-172 609.0 644 52.8
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.5e-171 607.1 632 53.6
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 4.5e-171 605.5 619 54.3
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 5.9e-171 605.1 626 53.4
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.7e-170 603.6 495 65.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.7e-170 603.6 627 54.9
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.8e-170 602.4 644 53.0
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.8e-170 602.4 531 61.2
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 4.2e-169 599.0 617 52.7
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 5.5e-169 598.6 605 53.1
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 9.4e-169 597.8 619 53.0
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 3.6e-168 595.9 646 51.9
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 4.7e-168 595.5 625 52.3
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 4.7e-168 595.5 617 53.0
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 4.7e-168 595.5 627 53.4
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.0e-167 594.3 646 50.9
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.3e-167 593.2 641 51.3
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 6.7e-167 591.7 646 53.9
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.3e-165 587.4 623 51.2
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 3.7e-165 585.9 604 53.0
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 3.7e-165 585.9 616 52.6
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.7e-165 585.9 622 50.8
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.4e-164 583.9 608 51.2
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 1.8e-164 583.6 606 52.3
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 3.1e-164 582.8 584 56.0
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.5e-163 579.3 635 49.6
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 7.7e-163 578.2 606 52.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.3e-162 577.4 611 56.1
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.7e-162 577.0 591 55.2
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.9e-162 576.2 619 51.9
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 6.5e-162 575.1 617 50.4
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 6.5e-162 575.1 617 50.4
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.5e-161 573.9 625 51.2
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.5e-161 573.9 582 54.0
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.9e-161 573.5 617 50.2
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.5e-161 572.0 686 49.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 7.2e-161 571.6 620 50.8
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.1e-160 570.1 643 51.8
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 6.1e-160 568.5 632 50.5
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 8.0e-160 568.2 585 54.4
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.3e-159 566.6 618 50.0
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.3e-159 566.6 618 50.0
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 2.0e-158 563.5 627 52.8
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.3e-157 560.8 605 51.1
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.3e-157 558.5 611 50.7
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 8.3e-157 558.1 534 56.6
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.0e-155 553.5 518 57.1
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.7e-154 550.4 634 50.5
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.8e-154 549.3 588 50.0
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 8.5e-154 548.1 484 59.5
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 7.2e-153 545.0 494 59.5
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 5.2e-151 538.9 484 59.3
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.3e-149 531.9 561 52.4
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 3.1e-148 529.6 582 51.2
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.2e-147 527.7 684 46.9
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.3e-146 523.5 523 53.5
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 9.5e-145 518.1 619 48.3
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.1e-140 504.6 521 53.7
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.8e-140 503.8 527 52.6
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.3e-138 496.9 617 47.3
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 3.1e-135 486.5 530 52.5
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.6e-123 447.6 421 56.5
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 3.9e-122 443.0 621 45.2
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 4.0e-119 433.0 471 51.6
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.9e-117 426.8 472 49.4
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.4e-116 424.5 495 48.9
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.4e-116 424.5 495 48.9
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 3.5e-115 419.9 626 42.2
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 7.8e-115 418.7 622 42.8
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.0e-114 418.3 549 46.4
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.2e-110 404.8 621 39.8
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.9e-108 397.5 611 43.0
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 4.3e-105 386.3 497 46.5
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 7.3e-105 385.6 390 52.8
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.1e-91 340.9 352 55.1
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.5e-73 280.8 540 35.9
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.2e-64 251.1 504 34.5
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.8e-61 240.4 276 51.4
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.3e-48 198.7 167 56.3
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 7.2e-44 183.0 132 67.4
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.1e-43 181.4 195 45.6
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.7e-24 117.5 177 34.5
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 7.8e-22 109.8 62 82.3
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 8.0e-19 99.8 161 43.5
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 8.6e-13 79.7 126 40.5
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-08 64.3 39 69.2


User provided reference genes

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