Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 9.1e-37 156.4 78 100.0
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 2.0e-36 155.2 78 98.7
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 5.0e-35 150.6 78 94.9
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 5.0e-35 150.6 78 94.9
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.2e-34 147.9 78 93.6
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 5.5e-34 147.1 78 93.6
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.6e-33 145.6 78 91.0
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.6e-33 145.6 78 91.0
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.6e-33 145.6 78 92.3
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 2.7e-33 144.8 78 92.3
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 4.7e-33 144.1 78 91.0
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 1.0e-32 142.9 78 91.0
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 1.4e-32 142.5 78 89.7
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.8e-32 142.1 78 89.7
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 1.8e-32 142.1 78 91.0
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.3e-32 141.7 78 89.7
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 3.0e-32 141.4 78 91.0
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 3.0e-32 141.4 78 88.5
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.0e-32 141.4 78 88.5
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 5.2e-32 140.6 78 87.2
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 5.2e-32 140.6 78 88.5
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 2.0e-31 138.7 78 87.2
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 2.0e-31 138.7 78 88.5
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 2.6e-31 138.3 79 88.6
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 2.6e-31 138.3 78 88.5
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 3.4e-31 137.9 78 88.5
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 3.4e-31 137.9 78 87.2
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 5.7e-31 137.1 78 85.9
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 5.7e-31 137.1 78 87.2
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 7.5e-31 136.7 78 83.3
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 9.8e-31 136.3 78 87.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.3e-30 136.0 77 84.4
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.3e-30 136.0 78 83.3
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.7e-30 135.6 74 87.8
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 1.7e-30 135.6 78 85.9
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 2.2e-30 135.2 78 87.2
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 2.2e-30 135.2 78 87.2
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 2.2e-30 135.2 78 85.9
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.8e-30 134.8 78 88.5
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.7e-30 134.4 78 82.1
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 4.8e-30 134.0 78 83.3
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 8.3e-30 133.3 78 82.1
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 8.3e-30 133.3 78 84.6
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 8.3e-30 133.3 78 84.6
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.1e-29 132.9 73 90.4
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.1e-29 132.9 79 83.5
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 1.4e-29 132.5 78 85.9
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 1.4e-29 132.5 78 85.9
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 3.1e-29 131.3 78 82.1
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 3.1e-29 131.3 78 84.6
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 7.0e-29 130.2 78 83.3
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 7.0e-29 130.2 78 83.3
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 7.0e-29 130.2 78 82.1
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 9.1e-29 129.8 78 80.8
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 9.1e-29 129.8 78 83.3
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 9.1e-29 129.8 78 83.3
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.2e-28 129.4 78 83.3
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 2.0e-28 128.6 78 83.3
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 2.7e-28 128.3 78 79.5
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 2.7e-28 128.3 78 79.5
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 4.5e-28 127.5 78 79.5
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 5.9e-28 127.1 78 80.8
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 5.9e-28 127.1 78 79.5
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.0e-27 126.3 78 78.2
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.0e-27 126.3 78 80.8
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 1.3e-27 125.9 78 79.5
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.3e-27 125.9 78 79.5
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.2e-27 125.2 78 78.2
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 2.9e-27 124.8 78 78.2
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 3.8e-27 124.4 74 79.7
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 6.5e-27 123.6 77 79.2
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 6.5e-27 123.6 78 79.5
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 8.5e-27 123.2 78 78.2
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 1.9e-26 122.1 78 78.2
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 3.2e-26 121.3 77 77.9
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 5.5e-26 120.6 75 77.3
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 7.2e-26 120.2 79 77.2
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.6e-25 119.0 75 78.7
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.7e-25 118.2 78 73.1
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.7e-25 118.2 78 73.1
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 3.6e-25 117.9 78 75.6
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.7e-25 117.5 78 74.4
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.7e-25 117.5 78 74.4
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 4.7e-25 117.5 78 75.6
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 4.7e-25 117.5 76 75.0
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 2.3e-24 115.2 78 69.2
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 8.8e-24 113.2 78 71.8
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.2e-23 112.8 78 71.8
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.5e-23 112.5 78 69.2
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 2.0e-23 112.1 78 70.5
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.4e-23 110.9 78 71.8
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 7.5e-23 110.2 78 69.2
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 2.8e-22 108.2 79 69.6
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 70.5
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 70.5
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 69.2
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 69.2
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 67.9
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 67.9
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 67.9
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 65.4
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 70.5
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 67.9
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 65.4
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 67.9
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 69.2
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.8e-21 105.5 78 66.7
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 2.4e-21 105.1 78 67.9
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 3.1e-21 104.8 79 68.4
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 4.1e-21 104.4 78 67.9
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 5.4e-21 104.0 78 64.1
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 7.0e-21 103.6 78 67.9
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 66.7
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 65.4
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 1.6e-20 102.4 78 66.7
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.0e-20 102.1 78 65.4
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 2.7e-20 101.7 78 59.0
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 2.7e-20 101.7 63 81.0
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 7.7e-20 100.1 79 64.6
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.0e-19 99.8 79 63.3
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 1.0e-19 99.8 79 63.3
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.0e-19 99.8 79 63.3
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 64.6
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 63.3
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.7e-19 99.0 75 64.0
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 1.7e-19 99.0 78 61.5
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 63.3
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 2.3e-19 98.6 78 62.8
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 2.9e-19 98.2 79 63.3
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.9e-19 98.2 79 63.3
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.9e-19 98.2 79 63.3
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.9e-19 98.2 78 64.1
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 2.9e-19 98.2 79 63.3
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 3.8e-19 97.8 57 78.9
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 3.8e-19 97.8 79 62.0
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 3.8e-19 97.8 79 62.0
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 3.8e-19 97.8 79 62.0
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 3.8e-19 97.8 77 62.3
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 5.0e-19 97.4 78 61.5
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 6.6e-19 97.1 79 62.0
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 6.6e-19 97.1 79 62.0
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 6.6e-19 97.1 79 62.0
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 6.6e-19 97.1 78 62.8
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 6.6e-19 97.1 78 64.1
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 8.6e-19 96.7 79 63.3
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 8.6e-19 96.7 77 62.3
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.1e-18 96.3 79 62.0
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.1e-18 96.3 79 62.0
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 1.1e-18 96.3 79 59.5
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.5e-18 95.9 79 62.0
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.5e-18 95.9 76 61.8
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 1.5e-18 95.9 76 61.8
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 2.5e-18 95.1 51 88.2
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 2.5e-18 95.1 58 77.6
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.5e-18 95.1 56 80.4
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 3.3e-18 94.7 78 62.8
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 3.3e-18 94.7 52 84.6
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 5.5e-18 94.0 78 62.8
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 7.2e-18 93.6 79 58.2
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.2e-17 92.8 79 58.2
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.6e-17 91.3 78 59.0
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 3.6e-17 91.3 77 59.7
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 3.0e-16 88.2 76 56.6
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 8.9e-16 86.7 72 65.3
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 1.5e-15 85.9 78 59.0
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 2.9e-14 81.6 78 53.8
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 3.7e-14 81.3 62 66.1
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.7e-12 75.1 41 85.4
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 3.5e-12 74.7 49 67.3
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.3e-11 72.8 40 85.0
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 1.3e-11 72.8 80 52.5
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 8.6e-11 70.1 40 80.0
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 4.3e-10 67.8 80 50.0
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 9.5e-10 66.6 73 52.1
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 3.6e-09 64.7 78 46.2
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 4.0e-08 61.2 31 87.1
Medtr3g069970 Medicago truncatula HOM05D004100 ORTHO05D004781 2.9e-06 55.1 29 82.8
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 8.3e-06 53.5 29 82.8


User provided reference genes

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