Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1979.5 1034 100.0
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1865.9 1033 93.6
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1751.1 1034 88.0
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1727.2 1036 86.6
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1590.9 1018 81.3
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1573.5 974 82.5
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1547.7 1019 79.4
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1546.6 1016 79.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1533.5 1016 78.9
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1532.7 1015 78.9
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1523.5 1018 79.2
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1496.5 1018 77.8
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1314.7 1005 68.4
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1303.1 1132 63.0
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1276.5 1039 65.4
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1273.1 1014 66.3
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1268.1 1030 66.0
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1264.6 1019 65.6
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1257.7 1013 65.4
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1257.3 1014 66.6
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1253.8 1021 65.0
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1245.0 1014 65.4
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1243.4 1019 65.2
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1240.7 1019 65.5
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1238.8 1028 63.9
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1238.4 1032 64.0
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1238.0 992 65.7
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1235.7 974 65.5
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1233.0 1023 64.4
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1227.2 1018 63.7
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1224.2 1015 63.8
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1221.1 1012 63.4
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1220.7 1025 63.7
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1218.4 1006 63.2
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1214.1 1038 63.2
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1210.3 1010 62.8
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1197.2 1036 62.2
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1195.3 1012 62.5
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1194.1 1013 62.4
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1181.4 1018 63.0
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1169.8 1047 60.2
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1167.1 933 65.5
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1164.8 1035 59.6
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1164.4 1034 61.3
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1163.3 1005 61.4
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1162.5 1010 61.6
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1161.4 959 64.0
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1158.7 1021 59.9
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1156.4 1019 62.5
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1155.6 1020 60.2
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1154.4 1006 61.3
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1153.7 1005 60.7
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1153.7 1012 60.9
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1153.3 1018 61.0
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1147.1 1020 59.5
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1143.3 1014 60.3
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1139.4 1036 58.1
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1139.4 1020 60.6
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1137.9 1048 58.3
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1132.9 1035 60.0
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1127.1 1026 59.4
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1116.7 1015 59.0
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1107.4 1051 57.8
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1104.7 1018 58.9
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1103.6 1014 59.6
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1099.7 1031 58.4
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1099.3 1041 57.0
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1098.6 1062 56.6
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1094.7 1024 56.9
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1093.6 1015 58.1
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1088.6 1045 56.5
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1088.6 1045 56.5
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1087.0 1022 58.6
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1083.6 1014 58.0
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1080.9 1038 56.6
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1076.6 1046 55.9
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1076.6 1051 56.1
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1076.2 1017 56.7
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 7.1e-312 1074.7 1046 55.8
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 1.6e-309 1066.2 1071 54.8
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 3.8e-308 1061.6 1009 59.0
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 2.7e-301 1038.9 1018 54.6
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.2e-298 1030.0 1031 54.3
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 3.3e-291 1005.4 1041 52.6
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 1.2e-280 970.3 749 66.9
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 5.1e-276 954.9 930 56.1
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 4.4e-272 941.8 744 65.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.7e-271 939.9 839 58.5
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 8.3e-271 937.6 1148 48.3
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 3.5e-269 932.2 744 64.9
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 4.6e-269 931.8 560 83.9
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 7.8e-269 931.0 743 65.8
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 9.3e-262 907.5 745 63.2
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 4.0e-257 892.1 1026 51.6
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 5.8e-256 888.3 776 61.0
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 1.6e-253 880.2 1022 50.6
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 1.2e-224 784.3 638 62.1
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 5.0e-223 778.9 998 47.3
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 3.4e-216 756.1 554 71.5
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.6e-200 704.1 645 57.5
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 9.2e-185 651.7 609 57.0
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 3.5e-184 649.8 1026 40.4
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 7.0e-169 599.0 896 41.6
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 9.5e-166 588.6 682 47.2
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 9.5e-158 562.0 427 64.9
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 5.2e-156 556.2 921 37.6
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 4.4e-147 526.6 988 37.2
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.6e-144 518.1 647 47.4
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 5.5e-97 360.1 272 69.9
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.8e-93 347.8 258 72.1
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 4.8e-93 347.1 777 35.3
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.8e-93 347.1 248 72.2
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.0e-88 329.7 318 55.0
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 1.9e-81 308.5 387 46.5
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 6.8e-79 300.1 200 75.5
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 5.7e-78 297.0 776 29.9
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 9.1e-76 289.7 243 65.8
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 2.3e-74 285.0 353 43.1
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-71 274.2 421 39.9
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 7.5e-70 270.0 204 67.2
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 4.7e-64 250.8 238 60.1
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 6.8e-63 246.9 823 28.2
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 4.7e-56 224.2 299 44.8
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.9e-42 177.9 134 72.4
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 5.6e-41 174.1 283 41.0
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.1e-36 159.8 108 75.0
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 3.8e-29 134.8 86 79.1
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 6.6e-26 124.0 76 84.2
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 1.4e-20 106.3 119 57.1
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 9.3e-20 103.6 68 76.5
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.3e-16 93.2 63 61.9
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 5.3e-15 87.8 52 90.4
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.5e-14 86.3 70 58.6
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 3.5e-11 75.1 46 80.4
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.0e-10 73.6 748 21.3
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 3.3e-09 68.6 88 47.7
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.1e-08 65.9 73 46.6


User provided reference genes

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