Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 5.5e-96 354.4 188 100.0
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 4.8e-76 288.1 193 84.5
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 4.7e-71 271.6 188 79.8
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 6.8e-70 267.7 188 78.2
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 8.9e-54 214.2 191 67.5
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 3.4e-53 212.2 190 68.4
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 6.4e-52 208.0 174 66.7
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 5.4e-51 204.9 195 64.6
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.7e-49 199.9 196 64.8
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 2.9e-36 156.0 186 56.5
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 2.4e-35 152.9 199 53.3
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 3.3e-32 142.5 199 54.3
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 3.3e-32 142.5 200 53.5
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 2.1e-31 139.8 209 51.7
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 6.2e-31 138.3 163 55.2
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.5e-29 133.7 209 46.4
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.8e-29 131.7 198 44.9
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.6e-29 131.3 198 45.5
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.9e-28 129.4 193 46.6
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 6.4e-28 128.3 177 48.6
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.1e-27 125.6 192 45.8
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 9.2e-27 124.4 181 45.3
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 1.2e-26 124.0 174 48.9
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-26 123.6 182 47.3
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.1e-26 123.2 179 46.9
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.1e-26 123.2 180 47.8
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.7e-26 122.9 182 47.3
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.7e-26 122.9 149 53.7
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 2.7e-26 122.9 185 48.1
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 3.5e-26 122.5 187 44.4
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.5e-26 122.5 182 47.3
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 4.6e-26 122.1 173 46.8
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 7.8e-26 121.3 201 42.8
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 1.0e-25 120.9 188 46.8
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.3e-25 120.6 201 43.8
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 3.9e-25 119.0 195 42.6
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.9e-24 116.7 182 46.2
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 4.3e-24 115.5 196 41.8
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 7.3e-24 114.8 200 43.0
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.2e-23 114.0 179 42.5
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 2.1e-23 113.2 176 44.9
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.1e-23 113.2 196 45.4
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 2.1e-23 113.2 168 46.4
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 4.7e-23 112.1 173 45.7
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 1.8e-22 110.2 199 42.7
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.4e-22 109.8 170 46.5
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.1e-22 109.4 184 44.0
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.0e-22 109.0 167 45.5
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 5.2e-22 108.6 113 61.1
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 9.0e-22 107.8 170 45.9
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.2e-21 107.5 209 39.7
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.2e-21 107.5 204 41.7
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 2.6e-21 106.3 173 41.6
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.6e-21 106.3 184 43.5
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.6e-21 106.3 189 42.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 3.4e-21 105.9 205 40.0
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 4.4e-21 105.5 179 39.1
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.4e-21 105.5 191 43.5
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 5.8e-21 105.1 174 44.3
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 7.6e-21 104.8 176 39.8
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 9.9e-21 104.4 196 43.4
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 1.3e-20 104.0 161 41.6
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.7e-20 103.6 185 40.0
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.7e-20 103.6 172 42.4
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 2.9e-20 102.8 161 42.9
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 3.8e-20 102.4 197 42.1
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-19 100.9 176 39.2
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.1e-19 100.9 165 41.8
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.9e-19 100.1 157 42.0
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.9e-19 100.1 157 42.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.9e-19 100.1 172 42.4
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.9e-19 100.1 172 42.4
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 2.4e-19 99.8 173 39.3
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 2.4e-19 99.8 173 39.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 2.4e-19 99.8 191 38.7
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 3.2e-19 99.4 231 37.2
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.2e-19 99.4 190 41.6
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 9.3e-19 97.8 210 37.1
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 9.3e-19 97.8 210 37.1
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 9.3e-19 97.8 204 40.2
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.6e-18 97.1 232 38.4
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 2.1e-18 96.7 210 38.1
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 3.5e-18 95.9 169 43.2
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 4.6e-18 95.5 209 37.3
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.6e-18 95.5 188 42.6
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 7.8e-18 94.7 193 37.3
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 1.0e-17 94.4 157 45.2
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.3e-17 94.0 202 36.1
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.3e-17 93.2 213 40.8
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 5.1e-17 92.0 188 39.9
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.6e-17 91.7 159 44.7
Lj1g0007483 Lotus japonicus HOM05D004654 ORTHO05D005414 1.5e-16 90.5 94 58.5
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.5e-16 90.5 211 40.3
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 1.9e-16 90.1 97 54.6
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.5e-16 89.7 147 44.9
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.3e-16 89.4 139 45.3
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 3.3e-16 89.4 223 39.0
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 4.3e-16 89.0 137 43.8
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.3e-15 87.4 197 42.1
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.6e-15 87.0 188 35.1
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 2.1e-15 86.7 187 39.0
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 2.1e-15 86.7 170 38.2
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 2.8e-15 86.3 135 43.0
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 2.8e-15 86.3 186 39.8
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 4.8e-15 85.5 179 37.4
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.8e-15 85.5 179 41.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 6.2e-15 85.1 221 38.0
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.1e-14 84.3 198 39.9
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.1e-14 84.3 193 35.2
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.4e-14 84.0 160 42.5
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.0e-14 82.4 206 36.9
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.0e-14 82.4 193 37.8
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 6.9e-14 81.6 195 37.4
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 6.9e-14 81.6 205 37.6
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.9e-14 81.6 222 36.0
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.0e-13 80.1 165 40.0
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.5e-13 79.0 183 38.8
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 5.8e-13 78.6 157 39.5
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 9.9e-13 77.8 172 39.0
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.3e-12 77.4 170 36.5
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.7e-12 77.0 128 42.2
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.7e-12 77.0 176 38.1
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.9e-12 76.3 169 36.1
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.8e-12 75.9 73 53.4
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 4.9e-12 75.5 191 37.7
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 6.4e-12 75.1 180 35.6
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-11 74.3 70 58.6
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.1e-11 74.3 186 36.6
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-11 73.9 72 56.9
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.9e-11 73.6 101 49.5
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 2.4e-11 73.2 209 34.4
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 2.4e-11 73.2 165 37.6
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 2.4e-11 73.2 198 33.8
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 2.4e-11 73.2 185 32.4
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.2e-11 72.8 92 45.7
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 4.2e-11 72.4 196 30.6
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 4.2e-11 72.4 149 39.6
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 4.2e-11 72.4 203 36.0
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 1.2e-10 70.9 213 36.2
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.6e-10 70.5 71 57.7
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.1e-10 70.1 146 38.4
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.7e-10 69.7 153 38.6
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 4.6e-10 68.9 182 35.2
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.3e-09 67.4 56 60.7
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.3e-09 67.4 144 38.2
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.8e-09 67.0 216 35.6
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.0e-09 66.2 215 36.3
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 5.6e-08 62.0 74 52.7
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 7.4e-08 61.6 55 58.2
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 1.1e-06 57.8 200 33.0


User provided reference genes

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