Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 4.6e-32 140.6 70 100.0
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 1.4e-31 139.0 70 98.6
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 5.7e-30 133.7 70 94.3
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 4.1e-28 127.5 70 91.4
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 2.7e-24 114.8 68 83.8
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 1.0e-23 112.8 69 82.6
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 4.1e-20 100.9 66 69.7
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 6.9e-20 100.1 66 69.7
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 6.9e-20 100.1 68 69.1
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 1.5e-19 99.0 68 67.6
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 2.6e-19 98.2 66 75.8
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 2.6e-19 98.2 66 68.2
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 3.4e-19 97.8 68 72.1
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 4.5e-19 97.4 63 73.0
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 1.0e-18 96.3 62 72.6
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 2.2e-18 95.1 63 73.0
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 2.9e-18 94.7 63 73.0
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 8.5e-18 93.2 72 72.2
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 8.5e-18 93.2 66 71.2
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 2.5e-17 91.7 71 64.8
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 5.5e-17 90.5 68 64.7
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 9.4e-17 89.7 70 64.3
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 1.2e-16 89.4 64 62.5
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 2.7e-16 88.2 71 64.8
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.7e-16 88.2 68 63.2
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 3.6e-16 87.8 70 64.3
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 3.6e-16 87.8 66 65.2
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 3.6e-16 87.8 66 65.2
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 3.6e-16 87.8 72 62.5
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 3.6e-16 87.8 62 69.4
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 4.7e-16 87.4 69 58.0
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 6.1e-16 87.0 66 65.2
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 8.0e-16 86.7 68 61.8
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 8.0e-16 86.7 65 66.2
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 1.0e-15 86.3 64 71.9
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 1.0e-15 86.3 70 62.9
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 1.0e-15 86.3 72 62.5
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.0e-15 86.3 72 62.5
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.0e-15 86.3 72 62.5
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 1.4e-15 85.9 68 61.8
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 1.4e-15 85.9 60 66.7
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 1.8e-15 85.5 66 63.6
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 2.3e-15 85.1 68 61.8
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 2.3e-15 85.1 68 60.3
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 2.3e-15 85.1 68 60.3
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 3.0e-15 84.7 68 64.7
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 3.9e-15 84.3 77 59.7
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 3.9e-15 84.3 58 67.2
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 5.2e-15 84.0 68 58.8
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 5.2e-15 84.0 68 60.3
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 5.2e-15 84.0 68 60.3
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 5.2e-15 84.0 72 59.7
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 5.2e-15 84.0 73 60.3
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 6.7e-15 83.6 58 67.2
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 8.8e-15 83.2 66 60.6
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 8.8e-15 83.2 66 60.6
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 8.8e-15 83.2 66 60.6
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 1.1e-14 82.8 70 60.0
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 1.5e-14 82.4 68 60.3
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 1.5e-14 82.4 68 58.8
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 2.0e-14 82.0 68 58.8
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 2.0e-14 82.0 68 58.8
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 2.0e-14 82.0 61 63.9
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 2.0e-14 82.0 68 61.8
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 2.6e-14 81.6 68 58.8
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 2.6e-14 81.6 68 58.8
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 2.6e-14 81.6 68 57.4
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 3.3e-14 81.3 66 60.6
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 3.3e-14 81.3 68 60.3
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 3.3e-14 81.3 68 60.3
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 4.4e-14 80.9 67 64.2
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 5.7e-14 80.5 68 58.8
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 9.7e-14 79.7 68 60.3
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 1.3e-13 79.3 63 60.3
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 2.8e-13 78.2 56 66.1
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 1.1e-12 76.3 66 59.1
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.4e-12 75.9 68 54.4
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 2.4e-12 75.1 56 66.1
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 4.1e-12 74.3 57 66.7
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 5.3e-12 73.9 66 54.5
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 7.0e-12 73.6 66 62.1
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 1.2e-11 72.8 47 85.1
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 1.6e-11 72.4 72 55.6
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.6e-11 72.4 51 62.7
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 1.6e-11 72.4 51 62.7
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.6e-11 72.4 60 65.0
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 2.6e-11 71.6 67 52.2
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 2.6e-11 71.6 67 52.2
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 3.5e-11 71.2 57 64.9
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 4.5e-11 70.9 65 49.2
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 5.9e-11 70.5 57 63.2
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 7.7e-11 70.1 47 80.9
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 1.5e-09 65.9 47 76.6
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 4.7e-08 60.8 60 55.0
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 8.0e-08 60.1 59 49.2
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 3.0e-07 58.2 43 74.4
HPP92_021450 Vanilla planifolia HOM05D007503 ORTHO05D009487 3.0e-07 58.2 45 73.3
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 2.6e-06 55.1 40 70.0
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 4.4e-06 54.3 48 62.5


User provided reference genes

Program Settings