Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 8.1e-220 766.9 430 100.0
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 2.8e-204 715.3 435 94.5
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 5.5e-192 674.5 436 82.8
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 4.2e-184 648.3 436 79.4
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 4.5e-178 628.2 432 78.9
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.4e-174 616.7 432 82.2
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 3.1e-171 605.5 442 76.5
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 7.2e-168 594.3 434 75.8
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 2.7e-162 575.9 436 79.4
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 1.5e-152 543.5 435 73.8
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 9.5e-136 487.6 435 68.0
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 4.4e-133 478.8 445 68.8
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.3e-132 477.2 444 64.2
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.2e-132 476.5 445 67.9
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 2.4e-131 473.0 435 65.7
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 3.5e-130 469.2 439 67.7
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 1.3e-129 467.2 449 64.6
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 5.1e-129 465.3 449 61.9
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 4.3e-128 462.2 449 61.7
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 5.6e-128 461.8 438 61.4
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 2.3e-126 456.4 439 63.8
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 6.8e-126 454.9 439 61.0
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 2.0e-125 453.4 445 66.1
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.7e-124 450.3 380 73.7
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 6.4e-124 448.4 438 63.7
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 1.4e-123 447.2 400 64.2
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.4e-123 447.2 448 59.6
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 1.4e-123 447.2 452 63.1
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 2.4e-123 446.4 445 68.3
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.1e-123 445.7 463 57.5
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 9.2e-123 444.5 381 65.9
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.6e-122 443.7 468 61.1
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 2.1e-122 443.4 414 62.6
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 2.7e-122 443.0 469 59.1
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 2.7e-122 443.0 435 64.6
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 7.8e-122 441.4 434 58.8
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 3.0e-121 439.5 398 63.6
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 5.1e-121 438.7 373 70.2
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.9e-120 436.8 466 60.9
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.6e-119 433.7 456 61.0
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 6.2e-119 431.8 335 76.7
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 6.2e-119 431.8 403 63.3
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 4.0e-118 429.1 369 66.7
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 4.0e-118 429.1 387 61.5
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 5.2e-118 428.7 443 57.6
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 5.2e-118 428.7 412 60.9
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 4.4e-117 425.6 387 65.4
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 4.4e-117 425.6 447 57.7
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 1.7e-116 423.7 439 60.8
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 2.9e-116 422.9 433 57.7
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.9e-115 420.2 412 62.4
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.4e-115 419.9 443 57.1
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 4.2e-115 419.1 381 66.7
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 4.2e-115 419.1 432 64.8
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 9.2e-115 417.9 445 60.7
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 1.2e-114 417.5 440 56.8
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 1.6e-114 417.2 372 66.4
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 1.6e-114 417.2 450 56.7
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.3e-113 414.1 382 63.1
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 4.3e-112 409.1 448 56.0
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 1.3e-111 407.5 441 56.0
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.4e-110 404.1 480 55.2
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 1.8e-110 403.7 444 61.9
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 1.5e-109 400.6 498 56.0
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.7e-108 397.1 314 73.6
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 1.1e-107 394.4 447 60.6
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 1.9e-107 393.7 417 61.6
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 9.3e-107 391.3 403 57.1
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.6e-106 390.6 379 63.6
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 8.7e-105 384.8 383 60.8
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 1.5e-104 384.0 415 63.4
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 1.5e-104 384.0 415 63.4
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 1.5e-104 384.0 447 60.9
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 1.6e-103 380.6 313 71.6
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 2.4e-102 376.7 403 63.5
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 2.4e-102 376.7 443 52.4
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 9.0e-102 374.8 405 62.7
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 5.8e-101 372.1 382 59.7
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.4e-99 367.5 313 74.1
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 7.9e-98 361.7 442 57.7
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.0e-97 361.3 390 60.3
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 3.0e-97 359.8 308 70.8
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 3.0e-97 359.8 336 72.9
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 8.7e-97 358.2 459 51.0
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 2.8e-95 353.2 412 60.0
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.8e-95 353.2 420 55.5
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.8e-94 350.5 399 61.9
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 9.0e-94 348.2 437 51.7
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.2e-92 343.6 378 63.0
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.2e-92 343.6 389 63.0
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 2.9e-92 343.2 422 54.7
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 1.1e-91 341.3 396 53.5
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 5.5e-91 339.0 393 56.7
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 1.6e-90 337.4 447 57.0
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.6e-90 337.4 393 56.5
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 7.9e-90 335.1 447 56.8
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 1.8e-89 334.0 376 54.0
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.8e-89 334.0 298 62.4
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 8.7e-89 331.6 445 48.5
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.6e-87 327.4 391 52.2
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 1.1e-86 324.7 318 59.1
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 1.1e-86 324.7 462 55.4
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.0e-84 318.2 307 65.5
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.4e-83 314.3 500 44.6
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.4e-83 314.3 500 44.6
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 9.3e-83 311.6 363 53.7
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.6e-82 310.8 362 56.6
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 2.1e-82 310.5 436 47.5
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 7.9e-82 308.5 636 38.1
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 8.7e-81 305.1 399 49.6
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.3e-79 301.2 492 45.1
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.6e-79 300.8 360 58.9
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 3.7e-79 299.7 451 52.1
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 6.3e-79 298.9 329 59.6
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.5e-77 294.3 314 56.4
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 3.1e-70 270.0 212 68.4
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 1.5e-69 267.7 383 47.3
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.2e-66 258.1 361 48.2
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.1e-65 252.7 204 64.7
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 4.5e-61 239.6 381 47.2
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 2.1e-58 230.7 197 61.4
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 2.6e-53 213.8 284 46.5
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 4.5e-53 213.0 431 39.7
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 2.2e-52 210.7 310 52.9
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.2e-50 204.9 117 86.3
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 8.3e-47 192.2 100 91.0
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.7e-39 166.8 313 45.7
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.6e-37 161.4 165 47.9
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 7.7e-37 159.1 390 39.2
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 1.3e-31 141.7 250 42.4
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 9.2e-30 135.6 316 46.5
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 8.6e-28 129.0 148 41.9
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.2e-26 125.2 69 88.4
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.1e-26 124.4 174 48.9
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.2e-25 119.8 174 47.1
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 5.8e-24 116.3 74 79.7
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 6.4e-23 112.8 188 44.7
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.0e-21 107.8 64 79.7
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 2.0e-21 107.8 145 52.4
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 7.8e-21 105.9 69 78.3
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 3.7e-15 87.0 47 85.1
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.1e-13 81.3 51 70.6
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 3.5e-13 80.5 90 47.8
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 3.9e-12 77.0 101 49.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 1.9e-11 74.7 65 52.3
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 7.3e-11 72.8 101 48.5
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.1e-10 71.2 154 39.0
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.3e-09 67.8 177 24.9
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 1.3e-07 62.0 52 61.5
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 2.9e-07 60.8 86 53.5


User provided reference genes

Program Settings