Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.8e-79 298.5 148 100.0
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 5.7e-72 274.2 159 87.4
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 4.5e-69 264.6 148 86.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 6.1e-66 254.2 148 84.5
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.8e-65 252.7 164 77.4
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.0e-64 249.2 159 78.0
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 9.7e-64 246.9 162 77.8
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 3.1e-62 241.9 175 72.0
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.9e-60 235.3 175 69.1
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 3.1e-54 215.3 168 69.0
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 5.0e-52 208.0 144 68.8
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.1e-51 206.8 154 66.2
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.9e-51 206.1 158 64.6
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.2e-50 203.4 148 67.6
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.2e-50 203.4 162 61.7
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.2e-50 203.4 144 68.8
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 2.1e-50 202.6 116 83.6
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 2.7e-50 202.2 146 66.4
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.4e-49 199.9 158 64.6
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.4e-49 199.9 158 62.7
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.0e-49 198.4 143 68.5
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 6.8e-49 197.6 158 63.9
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 8.8e-49 197.2 142 65.5
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 8.8e-49 197.2 143 65.7
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.5e-48 196.4 177 57.6
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.6e-48 195.7 168 60.7
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 3.4e-48 195.3 143 65.7
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 5.7e-48 194.5 155 63.2
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.3e-47 193.4 157 62.4
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.7e-47 193.0 153 62.7
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 2.8e-47 192.2 154 63.6
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 3.7e-47 191.8 162 59.9
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.8e-47 191.4 146 65.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 4.8e-47 191.4 154 62.3
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 6.3e-47 191.0 154 62.3
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.1e-46 190.3 154 62.3
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.4e-46 189.9 144 63.9
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.4e-46 189.1 164 61.0
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 2.4e-46 189.1 123 75.6
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 5.4e-46 188.0 112 81.2
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 7.0e-46 187.6 153 62.1
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 7.0e-46 187.6 168 57.7
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 9.1e-46 187.2 153 61.4
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.2e-45 186.8 169 57.4
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.2e-45 186.8 193 52.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 1.2e-45 186.8 170 58.2
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.0e-45 186.0 151 63.6
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.7e-45 185.7 171 56.1
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 3.5e-45 185.3 157 60.5
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 4.5e-45 184.9 151 62.9
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.9e-45 184.5 156 59.6
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.0e-44 183.7 178 55.1
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 2.3e-44 182.6 149 61.7
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 3.8e-44 181.8 175 54.9
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 6.5e-44 181.0 157 59.9
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 6.5e-44 181.0 173 56.6
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.1e-43 180.3 141 62.4
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.9e-43 179.5 167 56.3
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.9e-43 179.5 153 60.8
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 2.5e-43 179.1 154 59.7
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.2e-43 178.3 148 62.2
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 5.5e-43 177.9 184 53.3
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 9.5e-43 177.2 164 56.7
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.6e-42 175.3 146 60.3
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.6e-42 175.3 148 59.5
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.6e-42 175.3 156 57.1
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 8.0e-42 174.1 148 60.8
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.3e-41 172.6 146 60.3
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 3.0e-41 172.2 148 59.5
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 5.2e-41 171.4 146 59.6
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 5.2e-41 171.4 146 59.6
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 5.2e-41 171.4 146 59.6
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.2e-41 171.4 151 55.0
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 5.2e-41 171.4 144 63.2
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 8.9e-41 170.6 146 59.6
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.2e-40 170.2 144 60.4
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.2e-40 170.2 146 58.9
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.5e-40 169.9 168 54.2
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 3.4e-40 168.7 207 45.9
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 3.4e-40 168.7 144 61.8
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 5.7e-40 167.9 157 56.1
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 5.7e-40 167.9 172 51.7
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 7.5e-40 167.5 138 61.6
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.3e-39 166.8 155 58.1
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.3e-39 164.5 194 46.9
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.1e-38 163.7 139 61.9
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 2.4e-38 162.5 112 68.8
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.4e-38 162.5 216 43.1
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 2.4e-38 162.5 108 72.2
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 4.1e-38 161.8 144 56.9
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.2e-37 160.2 108 72.2
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.2e-37 160.2 155 54.2
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.6e-37 159.8 148 56.1
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.7e-37 159.1 120 65.8
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 2.7e-37 159.1 143 57.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.5e-37 158.7 129 62.0
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.9e-37 157.9 148 55.4
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 7.8e-37 157.5 110 70.9
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 7.8e-37 157.5 108 68.5
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.0e-36 157.1 108 69.4
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.0e-36 157.1 107 70.1
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.7e-36 156.4 121 62.8
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.7e-36 156.4 118 66.1
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.9e-36 155.6 107 72.0
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 2.9e-36 155.6 107 72.0
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 5.0e-36 154.8 109 69.7
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 5.0e-36 154.8 107 69.2
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 8.6e-36 154.1 108 69.4
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.1e-35 153.7 108 71.3
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 5.6e-35 151.4 117 64.1
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 7.3e-35 151.0 148 51.4
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 9.5e-35 150.6 154 53.2
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.6e-34 149.8 151 51.0
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 2.1e-34 149.4 128 59.4
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 2.8e-34 149.1 108 65.7
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.6e-34 148.7 148 49.3
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 4.4e-32 141.7 151 53.0
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.8e-32 141.4 167 45.5
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.3e-31 140.2 126 57.1
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.4e-30 136.7 94 69.1
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.6e-29 133.3 160 46.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.6e-29 133.3 146 50.0
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.3e-28 130.2 145 51.0
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 8.6e-28 127.5 146 50.0
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 3.3e-27 125.6 144 46.5
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.6e-26 122.1 111 53.2
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.1e-25 120.6 74 74.3
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 8.9e-25 117.5 125 47.2
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.6e-24 115.9 115 53.9
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 9.8e-24 114.0 154 46.1
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.9e-22 109.8 136 49.3
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 9.2e-22 107.5 85 62.4
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.2e-21 107.1 98 60.2
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 3.5e-21 105.5 148 45.3
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 3.9e-20 102.1 68 72.1
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.1e-19 100.5 73 60.3
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.5e-19 100.1 67 71.6
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.3e-19 98.6 151 39.7
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.2e-18 97.1 69 68.1
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.5e-16 90.1 108 48.1
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 5.8e-16 88.2 62 71.0
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.9e-15 85.1 79 54.4
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.2e-13 80.5 115 46.1
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 2.1e-13 79.7 115 46.1
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 6.0e-13 78.2 136 36.8
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 7.3e-11 71.2 47 63.8
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 9.5e-11 70.9 151 31.8
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.1e-09 67.4 44 72.7
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 2.0e-08 63.2 63 47.6
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.7e-07 60.1 58 51.7
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.1e-06 57.4 80 42.5
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 7.1e-06 54.7 35 65.7


User provided reference genes

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