Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 5.6e-130 467.6 235 100.0
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 3.6e-121 438.3 235 94.0
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 7.8e-116 420.6 236 90.7
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 6.6e-115 417.5 235 90.6
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 2.4e-93 345.9 236 77.5
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 2.7e-84 315.8 237 72.2
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.3e-83 313.5 235 72.3
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 3.9e-83 312.0 235 72.3
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 5.1e-83 311.6 235 72.3
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 8.1e-81 304.3 230 70.9
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 5.3e-80 301.6 236 68.2
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 5.3e-80 301.6 233 70.0
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.3e-75 287.0 234 67.1
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 8.7e-75 284.3 187 76.5
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 1.6e-73 280.0 240 65.0
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 3.7e-73 278.9 240 64.6
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 2.7e-68 262.7 236 62.3
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 6.1e-68 261.5 189 70.9
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 1.0e-67 260.8 177 75.1
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 2.3e-67 259.6 164 78.0
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 8.7e-67 257.7 231 62.3
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 1.5e-66 256.9 185 70.3
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 2.5e-66 256.1 159 76.7
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 3.3e-66 255.8 154 81.2
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 3.3e-66 255.8 190 70.0
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 7.4e-66 254.6 229 61.6
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 9.7e-66 254.2 160 80.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 9.7e-66 254.2 162 77.8
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 3.7e-65 252.3 171 74.3
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.8e-65 251.9 189 70.4
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 4.8e-65 251.9 232 61.2
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 6.3e-65 251.5 226 61.5
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 6.3e-65 251.5 183 71.6
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 6.3e-65 251.5 183 71.6
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 6.3e-65 251.5 183 71.6
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 1.1e-64 250.8 228 61.8
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.8e-64 250.0 160 78.8
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 3.1e-64 249.2 166 75.3
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 5.3e-64 248.4 157 77.1
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 9.0e-64 247.7 153 77.1
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.2e-63 247.3 226 60.6
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.5e-63 246.9 185 71.4
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.6e-63 246.1 226 60.6
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.6e-63 246.1 185 73.0
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 5.9e-63 245.0 230 58.3
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 5.9e-63 245.0 228 59.6
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 7.7e-63 244.6 163 74.8
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.0e-62 244.2 216 63.4
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.0e-62 244.2 197 63.5
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.3e-62 243.8 173 68.8
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 3.8e-62 242.3 232 60.3
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 5.0e-62 241.9 188 68.1
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 6.5e-62 241.5 228 60.5
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 1.4e-61 240.4 234 59.0
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.9e-61 240.0 154 78.6
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 3.2e-61 239.2 153 76.5
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 3.2e-61 239.2 153 76.5
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 4.2e-61 238.8 210 61.9
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 4.2e-61 238.8 189 66.7
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 9.4e-61 237.7 188 66.5
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.2e-60 237.3 181 66.3
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 1.2e-60 237.3 181 65.7
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.2e-60 237.3 192 65.6
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 1.6e-60 236.9 157 73.9
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 2.1e-60 236.5 159 71.7
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 2.1e-60 236.5 159 71.7
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 2.1e-60 236.5 159 71.7
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 2.7e-60 236.1 190 65.3
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 2.7e-60 236.1 194 64.9
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 2.7e-60 236.1 231 58.9
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 3.6e-60 235.7 244 57.0
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 3.6e-60 235.7 153 75.2
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 1.0e-59 234.2 160 73.1
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 1.0e-59 234.2 163 72.4
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.4e-59 233.8 238 58.8
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 1.4e-59 233.8 210 62.9
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.8e-59 233.4 191 64.4
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.8e-59 233.4 191 64.4
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 2.3e-59 233.0 132 82.6
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 2.3e-59 233.0 149 74.5
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 3.0e-59 232.6 176 68.8
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 3.9e-59 232.3 183 67.8
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 6.7e-59 231.5 184 64.7
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 8.8e-59 231.1 189 65.6
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 8.8e-59 231.1 232 56.9
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.1e-58 230.7 183 67.2
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.1e-58 230.7 204 62.7
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.1e-58 230.7 162 71.0
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 2.5e-58 229.6 153 71.9
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 3.3e-58 229.2 132 81.1
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 4.3e-58 228.8 194 63.9
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 4.3e-58 228.8 164 70.1
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.3e-57 227.3 200 61.5
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 1.3e-57 227.3 134 80.6
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 1.7e-57 226.9 150 75.3
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 3.7e-57 225.7 178 66.9
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.1e-56 224.2 192 62.5
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.4e-56 223.8 127 81.9
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 1.4e-56 223.8 131 80.2
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 1.2e-55 220.7 124 83.1
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 2.6e-55 219.5 151 72.2
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 4.5e-55 218.8 126 81.7
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.9e-55 218.4 192 66.1
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.0e-54 217.6 193 60.6
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.3e-54 217.2 131 77.9
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.7e-54 216.9 131 77.1
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.7e-54 216.9 131 77.1
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 2.2e-54 216.5 158 67.1
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 3.8e-54 215.7 194 59.3
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 5.0e-54 215.3 123 82.1
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 7.9e-52 208.0 180 61.7
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 3.7e-49 199.1 161 61.5
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 3.7e-49 199.1 125 76.0
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 7.0e-48 194.9 130 69.2
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 7.0e-48 194.9 139 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 1.3e-46 190.7 129 69.0
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.9e-46 189.5 162 56.8
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 8.0e-44 181.4 180 52.2
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 8.0e-44 181.4 180 52.2
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.8e-43 180.3 148 57.4
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.4e-40 169.9 179 57.5
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 6.5e-38 161.8 171 55.6
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 1.6e-31 140.6 80 82.5
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 2.7e-31 139.8 118 61.9
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 4.5e-31 139.0 77 85.7
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 5.7e-26 122.1 137 49.6
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 1.2e-23 114.4 77 74.0
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 8.0e-20 101.7 119 42.9
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 4.0e-19 99.4 140 41.4
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 2.9e-17 93.2 56 75.0
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 4.9e-17 92.4 54 77.8
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.0e-15 87.0 89 59.6
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 2.0e-15 87.0 103 48.5
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 4.6e-15 85.9 49 77.6
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 3.9e-14 82.8 57 68.4
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 3.3e-13 79.7 50 74.0
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 5.2e-11 72.4 89 52.8
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.2e-09 67.0 46 63.0
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 3.2e-08 63.2 33 84.8
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.2e-07 61.2 44 68.2


User provided reference genes

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