Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 5.8e-29 130.2 65 100.0
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 3.3e-24 114.4 69 87.0
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 1.3e-23 112.5 69 85.5
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 1.3e-23 112.5 69 85.5
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 1.3e-23 112.5 61 88.5
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 4.8e-23 110.5 61 85.2
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 6.2e-23 110.2 61 86.9
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 6.2e-23 110.2 61 86.9
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 6.2e-23 110.2 61 83.6
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 1.1e-22 109.4 61 85.2
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 1.4e-22 109.0 64 79.7
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 1.4e-22 109.0 64 79.7
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 1.4e-22 109.0 64 79.7
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 1.4e-22 109.0 64 79.7
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 1.4e-22 109.0 64 79.7
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 1.4e-22 109.0 64 79.7
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 1.4e-22 109.0 61 85.2
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 1.4e-22 109.0 61 83.6
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 1.4e-22 109.0 64 79.7
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 1.4e-22 109.0 64 79.7
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 3.1e-22 107.8 61 82.0
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 4.0e-22 107.5 64 78.1
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 4.0e-22 107.5 61 83.6
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 4.0e-22 107.5 64 76.6
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 4.0e-22 107.5 61 82.0
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 5.3e-22 107.1 64 76.6
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 6.9e-22 106.7 64 76.6
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 9.0e-22 106.3 64 78.1
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 1.2e-21 105.9 64 78.1
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 1.5e-21 105.5 64 78.1
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 1.5e-21 105.5 64 78.1
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 2.0e-21 105.1 61 80.3
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 2.0e-21 105.1 62 82.3
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 2.0e-21 105.1 61 82.0
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 2.6e-21 104.8 61 83.6
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 2.6e-21 104.8 61 85.2
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 3.4e-21 104.4 61 77.0
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 4.5e-21 104.0 64 73.4
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 4.5e-21 104.0 62 80.6
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 1.0e-20 102.8 64 75.0
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 1.0e-20 102.8 61 78.7
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 1.7e-20 102.1 61 80.3
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 2.9e-20 101.3 61 78.7
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 3.8e-20 100.9 61 77.0
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 3.8e-20 100.9 65 76.9
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 4.9e-20 100.5 62 82.3
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 4.9e-20 100.5 62 80.6
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 4.9e-20 100.5 62 79.0
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 6.5e-20 100.1 63 81.0
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 6.5e-20 100.1 61 77.0
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 6.5e-20 100.1 61 77.0
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 8.4e-20 99.8 63 77.8
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 8.4e-20 99.8 64 70.3
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.1e-19 99.4 66 75.8
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.1e-19 99.4 66 75.8
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 1.9e-19 98.6 66 74.2
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 2.5e-19 98.2 63 76.2
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 2.5e-19 98.2 63 74.6
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 3.2e-19 97.8 63 77.8
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 3.2e-19 97.8 63 77.8
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 3.2e-19 97.8 66 72.7
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 3.2e-19 97.8 66 71.2
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 4.2e-19 97.4 64 75.0
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 4.2e-19 97.4 66 69.7
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 5.5e-19 97.1 64 75.0
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 7.1e-19 96.7 63 76.2
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 7.1e-19 96.7 61 77.0
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 7.1e-19 96.7 61 77.0
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 7.1e-19 96.7 64 75.0
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 7.1e-19 96.7 64 76.6
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 7.1e-19 96.7 62 71.0
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 9.3e-19 96.3 62 71.0
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 9.3e-19 96.3 61 77.0
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 9.3e-19 96.3 61 77.0
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 9.3e-19 96.3 64 73.4
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.2e-18 95.9 64 76.6
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 1.6e-18 95.5 66 71.2
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 1.6e-18 95.5 64 73.4
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 1.6e-18 95.5 63 73.0
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.6e-18 95.5 64 73.4
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 1.6e-18 95.5 66 68.2
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 2.1e-18 95.1 61 75.4
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.1e-18 95.1 64 73.4
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.7e-18 94.7 64 73.4
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 3.5e-18 94.4 62 71.0
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 6.0e-18 93.6 62 67.7
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 7.9e-18 93.2 55 83.6
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 7.9e-18 93.2 68 64.7
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 1.0e-17 92.8 64 70.3
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 1.0e-17 92.8 64 70.3
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 1.0e-17 92.8 64 70.3
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.3e-17 92.4 67 68.7
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.3e-17 92.4 67 68.7
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 2.3e-17 91.7 65 69.2
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 3.0e-17 91.3 63 69.8
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 6.7e-17 90.1 64 73.4
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 1.1e-16 89.4 64 67.2
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 1.1e-16 89.4 76 57.9
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 1.9e-16 88.6 63 66.7
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 7.4e-16 86.7 62 67.7
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 9.6e-16 86.3 64 68.8
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 2.8e-15 84.7 65 60.0
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 9.0e-14 79.7 50 78.0
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 2.0e-13 78.6 58 58.6
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 3.2e-11 71.2 58 62.1
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 7.9e-10 66.6 56 60.7
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 3.0e-09 64.7 56 60.7
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 6.7e-09 63.5 35 77.1


User provided reference genes

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