Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 1.2e-260 903.3 732 100.0
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 2.0e-181 640.2 738 68.2
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 8.0e-127 458.8 739 59.1
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 5.2e-118 429.5 727 49.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 8.3e-116 422.2 742 55.3
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.2e-106 391.7 694 47.6
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 9.3e-99 365.5 375 83.5
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.0e-97 362.1 749 49.8
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 3.1e-94 350.5 665 47.7
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 7.4e-88 329.3 671 49.5
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 6.2e-87 326.2 745 43.6
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 2.0e-85 321.2 669 51.4
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.4e-83 315.1 652 46.5
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 6.7e-81 306.2 708 51.0
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.3e-79 302.0 732 45.8
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 2.4e-78 297.7 636 40.7
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.0e-77 294.7 797 46.3
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 2.6e-77 294.3 708 40.4
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.6e-77 294.3 492 54.3
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 7.9e-74 282.7 749 43.0
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 6.7e-73 279.6 675 37.0
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 8.2e-71 272.7 728 45.3
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 5.0e-68 263.5 781 42.5
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 4.6e-66 256.9 744 41.8
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 6.1e-66 256.5 718 45.3
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.5e-64 251.9 694 46.3
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 6.9e-62 243.0 727 44.2
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 6.9e-62 243.0 727 44.2
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 3.2e-59 234.2 604 47.5
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.3e-57 228.0 529 40.8
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.3e-57 228.0 703 34.9
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 5.1e-57 226.9 676 34.8
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 8.8e-57 226.1 675 38.4
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.7e-55 221.9 667 39.7
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.7e-55 221.9 471 43.1
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.2e-55 221.5 532 37.4
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 3.7e-55 220.7 638 35.4
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 4.8e-55 220.3 466 50.2
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 6.3e-55 219.9 712 37.4
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 4.1e-54 217.2 691 42.7
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 9.1e-54 216.1 529 39.9
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.2e-53 215.7 516 48.8
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.6e-53 215.3 689 41.2
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 2.6e-53 214.5 719 40.9
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 5.9e-53 213.4 705 33.9
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 5.0e-52 210.3 519 39.3
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 5.0e-52 210.3 690 42.0
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 8.5e-52 209.5 419 44.6
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.5e-51 208.8 685 44.4
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.9e-51 208.4 730 41.9
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 3.0e-49 201.1 749 37.9
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 5.2e-49 200.3 726 42.7
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 2.6e-48 198.0 694 41.4
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 7.5e-48 196.4 646 37.3
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.7e-47 195.3 746 38.5
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.4e-46 192.2 607 42.7
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 3.1e-46 191.0 488 35.7
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 4.1e-46 190.7 535 37.9
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.0e-45 188.3 563 32.0
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.5e-45 187.2 559 31.5
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.5e-45 187.2 638 41.1
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.0e-44 186.0 474 38.0
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.7e-44 185.3 516 34.7
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.2e-44 184.9 559 32.6
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 3.8e-44 184.1 713 37.6
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 3.8e-44 184.1 684 33.2
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 8.5e-44 183.0 504 34.7
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 7.2e-43 179.9 684 31.0
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 9.4e-43 179.5 524 38.2
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 6.1e-42 176.8 597 32.7
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.8e-41 175.3 646 41.8
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.0e-41 174.5 709 38.2
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 5.2e-41 173.7 500 33.0
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 3.4e-40 171.0 651 37.2
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.3e-39 169.1 533 37.7
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.2e-39 168.3 644 43.2
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.8e-39 167.9 656 35.8
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 4.8e-39 167.2 479 42.4
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 6.3e-39 166.8 748 38.6
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 3.5e-37 161.0 424 32.8
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 5.9e-37 160.2 673 29.4
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.8e-36 157.5 698 42.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 8.5e-36 156.4 530 40.9
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 1.1e-35 156.0 486 34.8
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-35 156.0 702 42.3
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.6e-34 152.1 480 41.0
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 3.6e-34 151.0 518 34.6
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.6e-34 151.0 745 36.5
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.4e-33 149.1 702 42.3
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 1.8e-30 138.7 695 46.2
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 7.0e-30 136.7 342 32.7
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.5e-27 129.0 474 32.7
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.5e-27 129.0 474 32.7
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.5e-27 129.0 474 32.7
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.9e-27 128.6 413 40.2
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 3.3e-27 127.9 321 42.4
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.3e-27 127.5 419 25.3
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 1.2e-26 125.9 663 25.0
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 2.1e-26 125.2 678 39.4
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.1e-26 125.2 592 25.2
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.8e-26 124.8 516 38.8
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 4.7e-26 124.0 487 30.8
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 3.0e-25 121.3 746 30.7
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.0e-25 121.3 323 40.9
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 4.0e-25 120.9 98 65.3
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 5.2e-25 120.6 260 34.2
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 2.0e-24 118.6 683 28.8
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 2.0e-24 118.6 381 35.2
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 7.5e-24 116.7 507 29.8
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 2.9e-23 114.8 524 37.8
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 2.9e-23 114.8 520 37.9
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.2e-22 111.3 528 36.7
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 7.0e-22 110.2 389 36.0
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 6.6e-20 103.6 360 31.4
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 5.6e-19 100.5 647 41.0
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 8.0e-18 96.7 500 25.6
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 5.2e-17 94.0 518 32.0
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 6.8e-17 93.6 330 37.6
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 6.8e-17 93.6 330 37.6
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 6.8e-17 93.6 691 26.2
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 8.9e-17 93.2 475 26.7
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 1.2e-16 92.8 369 26.0
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 1.3e-15 89.4 163 36.2
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-15 89.4 475 25.5
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.3e-15 89.4 185 31.9
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.3e-15 89.4 705 34.3
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 4.9e-15 87.4 385 32.2
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.2e-14 84.7 689 39.2
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 5.4e-14 84.0 419 27.2
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 9.2e-14 83.2 114 46.5
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.6e-13 82.4 166 39.8
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.0e-13 82.0 111 49.5
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 6.0e-13 80.5 111 47.7
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.0e-12 79.7 511 26.6
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.9e-12 77.8 260 29.6
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.5e-11 75.1 115 43.5
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 4.3e-11 74.3 490 30.2
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 3.6e-10 71.2 503 27.2
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 8.1e-10 70.1 128 35.2
TAR636G1625 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-09 69.7 60 58.3
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 6.8e-09 67.0 164 27.4
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 2.9e-07 61.6 276 25.0
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 4.9e-07 60.8 150 43.3
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 8.3e-07 60.1 301 21.6
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 1.1e-06 59.7 409 24.0
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 5.4e-06 57.4 684 28.1


User provided reference genes

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