Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 6.3e-203 710.7 390 100.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 2.2e-179 632.5 344 89.2
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 5.3e-178 627.9 343 88.9
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.8e-165 586.3 346 80.9
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 4.4e-164 581.6 343 81.0
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 2.1e-158 562.8 342 78.1
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 2.8e-158 562.4 347 76.4
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 4.7e-158 561.6 349 76.8
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.0e-157 558.9 338 78.1
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 7.5e-156 554.3 349 74.8
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.3e-155 553.5 342 78.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.1e-154 550.4 349 74.5
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.4e-154 549.3 342 77.8
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 4.1e-154 548.5 350 75.7
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.2e-154 547.4 349 73.9
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.6e-153 546.6 348 75.0
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.0e-153 546.2 348 75.6
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.3e-152 543.5 340 77.1
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.3e-152 542.7 338 75.7
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 2.3e-152 542.7 339 75.8
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.3e-152 542.7 344 74.7
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.3e-152 542.7 339 75.8
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 2.3e-152 542.7 341 75.4
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 2.3e-152 542.7 343 75.8
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 5.0e-152 541.6 346 74.6
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 6.6e-152 541.2 339 74.6
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 6.6e-152 541.2 347 75.2
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 2.5e-151 539.3 343 74.9
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.3e-151 538.9 342 75.4
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 3.3e-151 538.9 339 76.4
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 7.3e-151 537.7 359 72.7
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.2e-150 537.0 341 75.7
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.2e-150 537.0 346 74.9
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.6e-150 536.6 339 75.2
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 4.7e-150 535.0 339 75.5
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 6.1e-150 534.6 339 73.7
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 8.0e-150 534.3 345 75.1
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 8.0e-150 534.3 341 74.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 8.0e-150 534.3 344 74.1
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.0e-149 533.9 342 75.4
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.4e-149 533.5 339 73.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 3.1e-149 532.3 341 75.1
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 4.0e-149 531.9 339 74.0
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 4.0e-149 531.9 339 74.0
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.2e-148 530.4 302 82.1
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.5e-148 530.0 347 73.8
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.0e-148 529.6 337 74.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.6e-148 529.3 337 74.8
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.6e-148 529.3 340 74.4
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.4e-148 528.5 340 73.2
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 5.8e-148 528.1 337 74.2
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.8e-148 528.1 339 75.5
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 5.8e-148 528.1 345 73.9
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 5.8e-148 528.1 345 73.3
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 9.8e-148 527.3 339 73.2
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 9.8e-148 527.3 342 75.1
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 9.8e-148 527.3 342 74.3
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-147 526.9 339 73.2
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.7e-147 526.6 340 73.2
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 2.2e-147 526.2 338 71.9
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 2.2e-147 526.2 338 71.9
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.9e-147 525.8 337 73.9
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.9e-147 525.8 337 73.9
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 6.4e-147 524.6 339 72.9
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 8.3e-147 524.2 346 72.8
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.1e-146 523.9 337 74.5
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.4e-146 523.5 345 73.9
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.9e-146 523.1 347 72.9
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.2e-146 522.3 340 75.6
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 4.1e-146 521.9 341 73.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 7.0e-146 521.2 340 75.0
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 7.0e-146 521.2 336 72.3
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.2e-145 520.4 339 74.9
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.2e-145 520.4 337 71.8
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.6e-145 520.0 339 73.2
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.6e-145 520.0 349 71.6
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 2.7e-145 519.2 338 74.0
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 3.5e-145 518.8 341 72.7
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 3.5e-145 518.8 347 72.6
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 4.6e-145 518.5 340 72.4
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 6.0e-145 518.1 338 73.1
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.0e-144 517.3 327 72.2
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.3e-144 516.9 347 72.0
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.0e-144 515.0 356 71.6
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 8.6e-144 514.2 320 73.8
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 8.6e-144 514.2 343 70.6
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.5e-143 513.5 339 73.2
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.9e-143 513.1 355 71.5
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.9e-143 513.1 341 73.6
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.2e-142 510.4 333 73.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.6e-142 510.0 309 77.3
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.1e-142 509.6 340 70.3
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.3e-141 506.1 341 72.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 5.8e-140 501.5 346 72.0
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 7.5e-140 501.1 338 70.4
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 7.5e-140 501.1 300 78.3
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.3e-139 500.4 339 70.2
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.2e-139 499.6 352 69.0
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.9e-139 498.4 339 68.4
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 8.3e-139 497.7 339 71.1
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.4e-138 496.9 347 69.5
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 7.1e-138 494.6 343 69.4
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 7.8e-137 491.1 338 69.5
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.0e-136 490.7 306 75.5
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.3e-136 489.6 344 70.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 8.6e-136 487.6 339 66.7
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.1e-135 487.3 341 69.8
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.5e-135 486.9 354 67.2
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 5.6e-135 485.0 349 69.3
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.4e-133 480.3 365 63.6
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.8e-133 479.9 344 67.2
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 5.2e-133 478.4 338 66.3
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 8.9e-133 477.6 345 68.4
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 9.9e-132 474.2 345 67.8
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.4e-130 468.4 304 73.7
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 7.1e-130 468.0 336 68.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 8.1e-126 454.5 345 65.5
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.3e-123 447.2 344 61.9
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.1e-122 444.1 321 66.0
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.9e-122 443.4 341 61.9
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 7.1e-122 441.4 323 68.7
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.1e-121 439.9 342 62.3
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.5e-119 433.0 302 67.5
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 9.6e-119 431.0 346 61.8
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 2.9e-115 419.5 206 96.6
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.6e-113 413.7 328 59.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.1e-113 413.3 285 71.2
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.3e-112 409.8 257 73.9
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 8.7e-112 407.9 338 61.5
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.1e-109 399.4 340 57.4
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 4.5e-108 395.6 316 63.0
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.9e-107 392.1 304 63.2
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-98 364.4 194 85.1
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.1e-94 350.1 195 80.5
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.9e-87 327.0 219 69.9
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.8e-85 320.5 228 69.3
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.4e-85 320.1 177 82.5
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.2e-81 307.8 254 59.8
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.3e-78 297.7 399 40.6
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.7e-73 279.3 227 64.8
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.1e-72 275.8 230 59.6
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.1e-71 274.6 304 44.7
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.1e-71 274.6 344 41.9
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 4.2e-66 256.1 222 57.2
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.6e-63 246.9 205 57.6
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 2.8e-62 243.4 353 40.5
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.3e-54 218.0 180 62.2
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 8.3e-54 215.3 342 37.1
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.9e-46 189.5 125 72.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.6e-35 152.1 148 54.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.8e-25 120.6 104 58.7
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.7e-25 119.8 66 78.8
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.8e-24 115.9 116 56.0
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.6e-20 104.8 57 78.9
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 6.4e-06 56.2 29 79.3


User provided reference genes

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