Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 4.9e-55 217.6 116 100.0
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 8.7e-52 206.8 116 94.8
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.1e-49 199.9 116 90.5
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 6.9e-49 197.2 116 88.8
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 3.0e-44 181.8 117 82.9
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 6.7e-44 180.6 120 83.3
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 6.7e-44 180.6 120 83.3
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 9.7e-43 176.8 119 79.0
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 5.3e-41 171.0 121 79.3
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 2.0e-40 169.1 121 77.7
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 4.5e-40 167.9 120 76.7
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 1.4e-38 162.9 120 76.7
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.1e-35 153.3 120 71.7
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 7.4e-35 150.6 121 71.1
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 9.1e-33 143.7 116 68.1
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.7e-31 139.4 121 70.2
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 2.2e-31 139.0 121 68.6
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.2e-31 139.0 121 68.6
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.8e-31 138.3 121 68.6
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 5.0e-31 137.9 121 71.9
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 6.5e-31 137.5 120 70.0
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.5e-30 135.6 121 69.4
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 3.2e-30 135.2 120 67.5
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 3.2e-30 135.2 117 68.4
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 4.2e-30 134.8 112 70.5
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 4.2e-30 134.8 120 65.0
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 5.5e-30 134.4 117 67.5
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 5.5e-30 134.4 123 67.5
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.1e-29 132.5 121 68.6
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.1e-29 132.5 120 65.8
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 3.6e-29 131.7 122 63.9
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.0e-29 130.6 122 66.4
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.0e-28 130.2 118 68.6
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.4e-28 129.8 122 65.6
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.3e-28 129.0 120 67.5
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 3.9e-28 128.3 119 62.2
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 3.9e-28 128.3 116 65.5
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.2e-28 127.9 122 65.6
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 5.2e-28 127.9 118 64.4
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 8.8e-28 127.1 120 67.5
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.1e-27 126.7 121 67.8
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 3.3e-27 125.2 120 65.8
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 9.7e-27 123.6 128 62.5
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.2e-26 122.5 116 62.9
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 2.8e-26 122.1 117 64.1
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 3.7e-26 121.7 123 65.0
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.7e-26 121.7 116 63.8
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 3.7e-26 121.7 122 63.1
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.8e-26 121.3 116 62.1
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 6.3e-26 120.9 121 64.5
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 8.2e-26 120.6 126 62.7
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.8e-25 119.4 122 62.3
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.8e-25 119.4 122 62.3
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 2.4e-25 119.0 120 61.7
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.4e-25 119.0 121 62.8
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 3.1e-25 118.6 114 64.0
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 4.1e-25 118.2 119 63.9
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 9.1e-25 117.1 121 62.8
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 2.0e-24 115.9 121 63.6
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 7.7e-24 114.0 117 59.8
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.0e-23 113.6 129 57.4
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.3e-23 113.2 122 62.3
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.2e-23 112.5 123 61.0
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 2.2e-23 112.5 120 61.7
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 2.2e-23 112.5 120 61.7
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 2.9e-23 112.1 118 58.5
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 5.0e-23 111.3 123 61.0
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 5.0e-23 111.3 121 62.8
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 6.5e-23 110.9 116 60.3
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 8.5e-23 110.5 116 59.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.1e-22 110.2 118 60.2
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.1e-22 110.2 106 66.0
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.1e-22 110.2 121 58.7
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.5e-22 109.8 120 59.2
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.5e-22 109.0 122 59.8
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.5e-22 109.0 120 60.0
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 3.2e-22 108.6 117 55.6
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 4.2e-22 108.2 117 63.2
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 5.5e-22 107.8 116 57.8
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.6e-21 106.3 122 55.7
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 1.6e-21 106.3 113 54.9
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 2.7e-21 105.5 118 55.1
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 4.7e-21 104.8 124 54.8
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 4.7e-21 104.8 118 53.4
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 4.7e-21 104.8 117 57.3
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 4.7e-21 104.8 115 58.3
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 8.0e-21 104.0 123 57.7
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.8e-20 102.8 117 53.8
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.3e-20 102.4 117 53.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 2.3e-20 102.4 113 61.9
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 4.0e-20 101.7 117 53.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 6.8e-20 100.9 121 58.7
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 8.8e-20 100.5 117 52.1
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.2e-19 100.1 121 52.9
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.2e-19 100.1 119 52.9
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.2e-19 100.1 119 52.9
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.2e-19 100.1 121 52.9
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.2e-19 100.1 119 52.9
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.2e-19 100.1 121 52.9
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.2e-19 100.1 117 52.1
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.5e-19 99.8 115 53.0
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.5e-19 99.8 115 53.0
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.5e-19 99.8 117 56.4
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 2.0e-19 99.4 120 50.8
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 2.6e-19 99.0 119 53.8
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 2.6e-19 99.0 117 56.4
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.2e-18 95.9 114 56.1
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 4.8e-18 94.7 115 56.5
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 2.4e-17 92.4 121 52.9
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 5.3e-17 91.3 124 52.4
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 7.0e-17 90.9 112 55.4
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 7.0e-17 90.9 115 54.8
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 9.1e-17 90.5 157 47.1
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.2e-16 90.1 124 46.8
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 2.0e-16 89.4 121 52.1
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 3.5e-16 88.6 117 53.8
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 4.5e-16 88.2 115 48.7
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.7e-16 87.4 84 61.9
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.0e-15 87.0 90 57.8
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 2.9e-15 85.5 116 51.7
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 6.5e-15 84.3 111 50.5
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.9e-14 82.8 79 63.3
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.2e-14 82.0 107 48.6
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.2e-14 80.9 79 62.0
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.6e-13 79.7 79 62.0
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 3.6e-13 78.6 123 49.6
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 8.0e-13 77.4 120 47.5
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 1.4e-12 76.6 85 54.1
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 2.3e-12 75.9 85 54.1
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 4.0e-12 75.1 70 68.6
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 4.0e-12 75.1 113 49.6
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 1.2e-11 73.6 74 60.8
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 2.6e-11 72.4 100 48.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 5.7e-11 71.2 117 48.7
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.3e-10 70.1 79 53.2
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.8e-10 68.2 114 47.4
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 6.3e-10 67.8 78 52.6
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 8.3e-10 67.4 56 64.3
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 8.3e-10 67.4 56 64.3
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.6e-08 63.2 58 72.4
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.3e-07 59.3 56 57.1
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.9e-07 58.9 80 57.5
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 8.6e-07 57.4 198 33.3
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 5.5e-06 54.7 114 37.7


User provided reference genes

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