Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 9.6e-95 350.1 174 100.0
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 2.8e-86 322.0 174 93.1
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.3e-70 270.0 174 77.6
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.2e-68 263.5 174 77.0
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 6.5e-67 257.7 174 75.9
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.9e-66 256.1 174 73.0
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.6e-65 253.1 174 73.0
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 6.7e-64 247.7 174 72.4
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 8.7e-64 247.3 174 70.7
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 3.4e-60 235.3 177 66.1
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.7e-59 233.0 175 72.6
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 2.2e-59 232.6 175 72.6
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 2.9e-59 232.3 177 68.4
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 8.5e-59 230.7 175 66.9
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 5.5e-58 228.0 175 69.7
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 3.0e-56 222.2 175 64.0
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 5.1e-56 221.5 175 63.4
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 6.7e-56 221.1 179 67.6
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.0e-55 219.5 178 64.0
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.8e-53 213.0 177 65.0
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.8e-53 213.0 174 64.4
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 5.3e-53 211.5 177 63.8
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 9.1e-53 210.7 177 62.1
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.5e-52 209.9 177 60.5
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 2.6e-52 209.1 177 58.2
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 7.7e-52 207.6 177 58.8
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 7.7e-52 207.6 177 60.5
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.0e-51 207.2 171 60.8
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 2.9e-51 205.7 177 61.6
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 6.5e-51 204.5 173 63.6
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 6.5e-51 204.5 173 63.6
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 6.5e-51 204.5 170 62.9
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 8.5e-51 204.1 169 66.3
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.1e-50 203.8 179 60.9
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.4e-50 203.4 173 63.6
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.9e-50 203.0 173 63.6
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 5.5e-50 201.4 179 60.3
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.2e-49 200.3 174 59.2
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 2.7e-49 199.1 179 59.2
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 3.6e-49 198.7 175 61.7
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 8.0e-49 197.6 176 60.8
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.8e-48 196.4 177 59.3
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 3.9e-48 195.3 174 58.0
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 3.9e-48 195.3 174 58.0
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 4.4e-47 191.8 175 57.1
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.3e-46 190.3 179 55.9
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 1.7e-46 189.9 182 59.9
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 1.7e-46 189.9 175 58.9
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.2e-46 189.5 181 59.7
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 4.8e-46 188.3 171 60.8
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 8.2e-46 187.6 166 59.0
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.8e-45 186.4 169 55.6
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 5.3e-45 184.9 171 57.3
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 1.6e-44 183.3 183 52.5
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 1.6e-44 183.3 173 55.5
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 4.5e-44 181.8 168 57.7
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 1.3e-43 180.3 178 56.2
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.7e-43 179.9 174 55.7
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 2.2e-43 179.5 180 53.9
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.2e-43 179.5 179 55.3
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 3.8e-43 178.7 176 52.8
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 6.5e-43 177.9 175 53.7
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 6.5e-43 177.9 178 55.6
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 8.5e-43 177.6 180 53.3
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.5e-42 176.8 176 51.1
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 5.5e-42 174.9 175 54.3
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 5.5e-42 174.9 180 53.3
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.7e-41 172.6 178 52.8
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 4.7e-41 171.8 175 54.3
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 8.0e-41 171.0 178 51.7
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.8e-40 169.9 167 52.1
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 2.3e-40 169.5 175 51.4
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 6.7e-40 167.9 162 52.5
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 8.8e-40 167.5 177 55.4
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 8.8e-40 167.5 178 52.2
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.2e-39 167.2 178 51.7
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.6e-39 166.0 182 51.6
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 7.5e-39 164.5 179 49.7
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 7.5e-39 164.5 172 51.7
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.7e-38 163.3 171 52.6
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 2.2e-38 162.9 184 50.0
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 2.2e-38 162.9 180 51.7
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 2.8e-38 162.5 183 51.9
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 8.2e-38 161.0 176 50.6
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.1e-37 160.6 178 47.2
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.4e-37 159.5 177 49.7
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 2.4e-37 159.5 176 48.9
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 3.1e-37 159.1 169 49.1
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 4.1e-37 158.7 182 48.9
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 2.0e-36 156.4 176 47.7
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.5e-34 149.4 174 46.0
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 9.4e-34 147.5 168 44.6
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.6e-33 146.7 179 48.0
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.7e-33 145.2 167 44.3
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.3e-32 142.9 127 60.6
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 3.0e-32 142.5 176 47.2
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 3.0e-32 142.5 176 44.9
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 6.8e-32 141.4 189 43.9
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 8.8e-32 141.0 184 46.2
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.7e-30 136.7 173 46.2
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.7e-30 136.7 134 56.0
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 2.8e-30 136.0 171 46.2
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 6.3e-30 134.8 169 45.6
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 6.3e-30 134.8 169 46.2
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.1e-29 134.0 167 46.1
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.1e-29 134.0 171 46.8
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.1e-29 134.0 167 46.1
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.8e-29 133.3 168 46.4
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.8e-29 133.3 171 46.8
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.8e-29 133.3 163 47.9
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 2.4e-29 132.9 171 47.4
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 3.1e-29 132.5 169 46.2
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 3.1e-29 132.5 171 46.2
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 4.1e-29 132.1 120 54.2
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 5.4e-29 131.7 168 44.6
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 7.0e-29 131.3 167 46.1
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 1.2e-28 130.6 174 44.8
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 1.2e-28 130.6 174 44.8
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.6e-28 130.2 176 44.3
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.6e-28 130.2 163 46.0
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 3.5e-28 129.0 167 44.9
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 4.5e-28 128.6 174 44.3
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 7.7e-28 127.9 169 44.4
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.3e-27 127.1 174 45.4
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.3e-27 127.1 171 43.9
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 2.3e-27 126.3 167 45.5
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 2.3e-27 126.3 171 44.4
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 2.9e-27 125.9 171 43.9
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 6.5e-27 124.8 171 45.0
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.1e-25 119.8 135 47.4
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 3.6e-25 119.0 177 43.5
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 4.0e-24 115.5 104 58.7
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 5.7e-23 111.7 152 43.4
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 8.3e-22 107.8 112 45.5
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 4.1e-21 105.5 116 49.1
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.3e-19 100.5 91 57.1
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 5.6e-18 95.1 165 35.8
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 9.5e-18 94.4 187 36.4
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.9e-16 87.8 102 49.0
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 1.7e-14 83.6 68 61.8
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.8e-13 80.1 196 30.1
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 9.2e-13 77.8 172 36.6
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.3e-11 73.9 171 32.7


User provided reference genes

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