Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 7.1e-99 364.0 193 100.0
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 1.1e-94 350.1 193 96.9
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 1.3e-84 316.6 194 87.1
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 1.6e-82 309.7 194 88.7
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 3.2e-75 285.4 191 80.1
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 3.2e-75 285.4 194 82.0
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 2.1e-74 282.7 194 80.4
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 1.0e-73 280.4 195 80.5
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 6.7e-73 277.7 194 79.4
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 5.7e-72 274.6 192 78.6
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 1.7e-71 273.1 195 79.5
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 8.5e-68 260.8 197 79.2
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 1.9e-67 259.6 197 78.7
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 4.2e-67 258.5 193 75.1
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 3.6e-66 255.4 191 76.4
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 1.0e-65 253.8 195 74.4
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 3.9e-65 251.9 200 73.0
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 3.9e-65 251.9 195 74.4
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 7.4e-64 247.7 199 71.4
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 7.4e-64 247.7 199 71.4
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 1.3e-63 246.9 199 71.4
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.8e-63 245.7 198 70.7
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.8e-63 245.7 196 71.9
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 2.8e-63 245.7 196 71.9
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 3.7e-63 245.4 164 81.7
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 3.7e-63 245.4 164 78.7
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 6.3e-63 244.6 199 70.4
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.8e-62 243.0 196 71.4
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 1.8e-62 243.0 190 71.6
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 3.1e-62 242.3 194 70.6
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 3.1e-62 242.3 197 70.1
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 3.1e-62 242.3 199 69.8
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 3.1e-62 242.3 190 74.7
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 4.1e-62 241.9 204 69.1
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 4.1e-62 241.9 193 71.0
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 7.0e-62 241.1 200 70.0
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 9.1e-62 240.7 191 70.2
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 9.1e-62 240.7 155 82.6
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 1.2e-61 240.4 193 73.6
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 2.0e-61 239.6 171 75.4
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 2.0e-61 239.6 179 73.7
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 4.5e-61 238.4 173 74.6
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 5.9e-61 238.0 207 69.1
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 5.9e-61 238.0 207 69.1
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 5.9e-61 238.0 198 71.2
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 5.9e-61 238.0 158 82.3
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 7.7e-61 237.7 158 82.9
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 7.7e-61 237.7 193 69.9
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 1.3e-60 236.9 199 67.8
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 1.7e-60 236.5 169 75.1
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 1.7e-60 236.5 200 69.0
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 1.7e-60 236.5 166 74.7
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 5.0e-60 235.0 160 77.5
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 6.5e-60 234.6 160 77.5
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 6.5e-60 234.6 149 85.9
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 8.5e-60 234.2 194 69.6
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 1.5e-59 233.4 158 78.5
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 2.5e-59 232.6 193 69.9
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 3.2e-59 232.3 153 83.0
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 3.2e-59 232.3 166 74.1
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 5.5e-59 231.5 205 66.3
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 2.7e-58 229.2 200 65.0
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 6.1e-58 228.0 175 69.7
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 2.3e-57 226.1 157 77.7
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 6.7e-57 224.6 198 67.2
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 8.8e-57 224.2 176 69.9
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 2.6e-56 222.6 202 63.9
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 3.3e-56 222.2 185 65.4
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 3.3e-56 222.2 187 65.2
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 4.4e-56 221.9 193 64.8
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 4.4e-56 221.9 195 68.7
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 7.4e-56 221.1 154 77.3
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 7.4e-56 221.1 153 77.1
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 1.3e-55 220.3 154 78.6
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 1.3e-55 220.3 153 77.1
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.7e-55 219.9 183 66.7
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 3.7e-55 218.8 168 70.2
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 3.7e-55 218.8 168 70.2
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 8.2e-55 217.6 167 70.7
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 8.2e-55 217.6 167 70.7
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 1.1e-54 217.2 207 61.8
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 1.8e-54 216.5 193 65.8
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 1.8e-54 216.5 181 66.3
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 2.4e-54 216.1 191 64.9
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 2.4e-54 216.1 152 75.0
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 2.4e-54 216.1 153 76.5
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 2.4e-54 216.1 198 65.2
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 7.0e-54 214.5 195 63.6
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 9.1e-54 214.2 156 73.1
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 2.6e-53 212.6 166 71.7
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 4.5e-53 211.8 197 63.5
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 4.5e-53 211.8 197 62.4
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 4.5e-53 211.8 166 71.1
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 5.9e-53 211.5 193 65.3
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 7.7e-53 211.1 154 72.7
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 1.3e-52 210.3 196 62.2
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 1.9e-51 206.5 196 63.3
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 5.5e-51 204.9 193 61.7
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 1.2e-50 203.8 132 80.3
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 8.0e-50 201.1 161 68.3
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 2.3e-49 199.5 198 63.1
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 4.4e-48 195.3 120 85.0
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 8.3e-47 191.0 136 74.3
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 4.1e-46 188.7 130 73.1
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 9.1e-46 187.6 162 64.8
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 9.1e-46 187.6 155 65.2
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 1.6e-45 186.8 147 66.7
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 1.0e-44 184.1 156 62.8
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.7e-44 183.3 119 79.0
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 3.8e-44 182.2 117 79.5
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 5.0e-44 181.8 117 81.2
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 1.0e-41 174.1 130 71.5
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 1.2e-40 170.6 185 53.0
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 4.9e-39 165.2 109 78.9
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 2.7e-37 159.5 130 61.5
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 1.5e-32 143.7 135 60.0
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 9.8e-32 141.0 86 87.2
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.2e-31 139.8 86 87.2
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 3.7e-31 139.0 86 86.0
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 8.3e-31 137.9 178 45.5
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 4.1e-30 135.6 154 55.8
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 2.7e-29 132.9 156 51.9
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 1.2e-26 124.0 137 56.2
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 8.0e-26 121.3 86 72.1
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 3.1e-25 119.4 92 70.7
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 1.4e-22 110.5 78 71.8
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 9.5e-19 97.8 128 50.8
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 6.8e-17 91.7 200 38.0
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.2e-07 60.1 105 34.3


User provided reference genes

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