Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.8e-109 398.7 206 100.0
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 2.6e-99 365.5 202 95.0
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 2.6e-99 365.5 202 95.0
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 9.9e-99 363.6 202 94.6
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.7e-93 345.1 202 90.6
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 3.4e-91 338.6 203 91.1
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.9e-90 335.5 202 88.6
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 4.2e-89 331.6 202 87.6
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.5e-86 322.4 202 83.2
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 3.7e-85 318.5 209 83.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.6e-83 312.4 203 83.7
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.5e-81 305.8 204 80.9
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.1e-78 297.0 203 78.3
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 7.4e-78 294.3 203 77.3
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 4.1e-76 288.5 202 76.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 9.0e-76 287.3 204 76.0
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.6e-75 285.8 203 75.4
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.5e-75 285.0 202 75.7
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.3e-74 283.5 204 76.5
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 6.5e-74 281.2 205 73.2
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.1e-73 280.4 203 73.9
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.1e-73 280.4 202 74.3
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 3.2e-73 278.9 205 72.7
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.2e-73 278.9 203 72.9
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 4.2e-73 278.5 205 76.1
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 9.3e-73 277.3 203 74.9
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 7.9e-72 274.2 205 73.2
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 5.1e-71 271.6 205 74.1
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.1e-70 270.4 187 75.4
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.1e-70 270.4 204 72.1
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.5e-70 270.0 196 74.0
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 1.5e-70 270.0 202 74.3
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 2.5e-70 269.2 153 91.5
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.5e-70 269.2 207 72.0
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.3e-70 268.9 207 72.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 5.7e-70 268.1 155 91.6
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 7.4e-70 267.7 202 73.3
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 9.7e-70 267.3 205 71.7
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.3e-69 266.9 204 72.5
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.3e-69 266.9 207 71.5
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.7e-69 265.4 203 71.9
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 3.7e-69 265.4 203 71.9
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 4.8e-69 265.0 179 80.4
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 4.8e-69 265.0 179 80.4
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 8.2e-69 264.2 203 70.9
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.8e-68 263.1 203 72.4
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.8e-68 263.1 206 72.3
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 5.3e-68 261.5 207 71.5
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.5e-67 260.0 204 69.1
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.0e-66 257.3 221 67.0
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.0e-66 257.3 174 76.4
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.7e-66 256.5 202 70.8
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.7e-66 256.5 210 70.0
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 2.2e-66 256.1 172 76.7
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 5.0e-66 255.0 177 76.3
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 8.5e-66 254.2 206 68.9
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.9e-65 253.1 189 71.4
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 2.5e-65 252.7 206 68.4
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 3.2e-65 252.3 202 68.8
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 9.4e-65 250.8 147 86.4
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 3.6e-64 248.8 171 76.6
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 3.6e-64 248.8 202 67.3
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.8e-63 246.5 212 65.1
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.9e-63 245.4 249 59.4
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.7e-63 244.6 162 76.5
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 8.8e-63 244.2 172 75.0
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 8.8e-63 244.2 172 75.0
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.5e-62 243.4 150 80.0
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.6e-62 242.7 206 66.0
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 3.3e-62 242.3 176 73.3
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 5.7e-62 241.5 150 83.3
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.4e-62 241.1 237 59.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.7e-61 240.0 153 79.7
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.2e-61 239.6 150 80.0
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 3.7e-61 238.8 150 80.0
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 3.7e-61 238.8 208 64.9
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 6.3e-61 238.0 197 68.5
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 8.2e-61 237.7 209 65.6
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 8.2e-61 237.7 213 65.3
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.1e-60 237.3 212 63.2
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.8e-60 236.5 212 66.0
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 5.3e-60 235.0 150 77.3
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 5.3e-60 235.0 161 78.3
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.9e-60 234.6 150 79.3
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 9.1e-60 234.2 150 77.3
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 9.1e-60 234.2 150 78.7
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.4e-59 232.3 150 78.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 4.5e-59 231.9 183 70.5
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.5e-59 231.9 150 78.7
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 4.5e-59 231.9 213 60.6
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.0e-58 230.7 148 78.4
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 2.2e-58 229.6 153 74.5
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.2e-58 229.6 202 64.4
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 8.5e-58 227.6 150 75.3
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-57 227.3 150 80.0
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.4e-57 226.9 150 76.0
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.9e-57 226.5 150 78.7
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.9e-57 226.5 205 65.4
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.6e-56 223.4 214 61.7
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 2.1e-56 223.0 143 81.1
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 7.9e-56 221.1 190 63.2
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.0e-55 220.7 245 56.3
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.0e-55 220.7 187 64.2
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.8e-55 219.9 189 64.6
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.3e-55 219.5 148 75.0
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 5.2e-55 218.4 213 60.6
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 5.2e-55 218.4 204 61.8
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 6.7e-55 218.0 161 70.8
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 8.8e-55 217.6 162 71.0
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 8.8e-55 217.6 150 73.3
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 8.8e-55 217.6 203 65.5
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 8.8e-55 217.6 201 62.2
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.1e-54 217.2 150 75.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-54 216.9 204 65.7
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-54 216.5 203 65.5
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.6e-54 216.1 166 68.7
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.6e-54 216.1 203 63.5
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 7.4e-54 214.5 203 58.6
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-53 213.8 204 64.7
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 6.3e-53 211.5 225 57.8
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.1e-52 210.7 178 65.2
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.8e-52 209.9 182 65.9
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.1e-52 209.1 155 68.4
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.5e-51 205.7 178 64.6
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-51 205.7 220 60.9
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-51 205.7 220 60.9
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.0e-50 204.1 168 67.9
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.3e-50 203.8 202 58.4
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.3e-50 203.8 144 74.3
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.9e-49 199.9 218 55.0
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.9e-49 199.9 150 70.7
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 2.1e-48 196.4 125 78.4
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.1e-48 196.4 194 61.9
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-48 196.1 220 58.6
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.8e-47 193.4 125 78.4
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 7.5e-46 188.0 197 53.3
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 7.5e-46 188.0 155 65.8
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.2e-45 186.4 160 66.2
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 4.8e-45 185.3 144 70.8
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.3e-44 181.8 156 60.3
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-43 180.6 150 64.7
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 4.5e-43 178.7 189 56.1
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 3.2e-41 172.6 107 80.4
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-40 170.6 110 79.1
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.6e-40 170.2 145 66.9
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 3.6e-40 169.1 151 58.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 6.1e-40 168.3 83 97.6
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 6.1e-40 168.3 163 58.3
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.4e-36 157.1 117 68.4
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.5e-33 147.1 95 81.1
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.4e-31 140.6 91 82.4
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.5e-30 137.1 135 60.0
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 2.6e-30 136.3 134 59.0
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 6.3e-29 131.7 152 54.6
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 2.4e-20 103.2 83 62.7
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.3e-18 97.4 98 53.1
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.7e-18 97.1 156 35.3
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 5.0e-18 95.5 185 34.6
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 4.1e-12 75.9 78 56.4
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 9.2e-12 74.7 75 56.0
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.5e-09 67.4 60 53.3
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 4.3e-09 65.9 188 30.9
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 3.6e-08 62.8 102 41.2
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.8e-07 60.5 70 50.0
COL.COLO4_35030 Corchorus olitorius HOM05D000001 ORTHO05D010435 2.6e-06 56.6 32 78.1


User provided reference genes

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