Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 4.1e-193 677.9 355 100.0
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.8e-178 628.6 359 92.2
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 2.9e-170 602.1 358 88.3
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 2.3e-167 592.4 364 87.4
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.9e-166 589.3 364 86.8
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 4.3e-166 588.2 364 86.8
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 9.5e-166 587.0 358 86.6
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.6e-165 586.3 361 85.6
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 3.4e-163 578.6 367 83.7
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.7e-162 576.2 362 82.9
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 2.1e-160 569.3 360 81.9
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 3.5e-160 568.5 362 81.5
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 6.6e-159 564.3 334 87.1
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.5e-158 563.1 334 87.1
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.9e-158 562.8 366 82.0
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.5e-158 562.4 333 87.1
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 5.6e-158 561.2 368 81.2
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 7.3e-158 560.8 366 80.3
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 2.8e-157 558.9 366 79.8
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 2.8e-157 558.9 333 86.5
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 6.2e-157 557.8 334 86.8
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 8.1e-157 557.4 363 81.5
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.1e-157 557.4 345 83.5
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 1.8e-156 556.2 348 82.5
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.8e-156 556.2 363 81.5
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 1.8e-156 556.2 357 81.2
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 2.3e-156 555.8 334 85.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 3.1e-156 555.4 363 80.4
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 6.8e-156 554.3 346 83.2
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.2e-155 553.5 363 81.0
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 2.0e-155 552.7 334 86.2
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.4e-155 552.0 334 85.0
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 4.4e-155 551.6 359 80.8
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 7.5e-155 550.8 363 80.4
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 9.9e-155 550.4 376 80.9
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 9.9e-155 550.4 364 80.2
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.3e-154 550.1 379 77.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.7e-154 549.7 334 84.1
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.7e-154 549.7 359 80.2
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 2.2e-154 549.3 335 84.5
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 2.2e-154 549.3 335 84.5
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 2.9e-154 548.9 363 79.3
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 2.9e-154 548.9 334 84.7
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 3.7e-154 548.5 365 79.7
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 3.7e-154 548.5 359 80.8
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 3.7e-154 548.5 347 82.7
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 8.3e-154 547.4 343 83.4
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 8.3e-154 547.4 359 80.8
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-153 547.0 358 80.4
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-153 547.0 359 80.8
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.1e-153 547.0 359 80.2
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.4e-153 546.6 360 79.7
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.4e-153 546.6 363 80.4
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 2.4e-153 545.8 335 84.2
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.4e-153 545.8 334 84.1
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 3.2e-153 545.4 334 84.1
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 3.2e-153 545.4 341 82.7
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 5.4e-153 544.7 336 83.3
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 7.1e-153 544.3 334 84.7
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 9.2e-153 543.9 334 83.5
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 9.2e-153 543.9 334 83.5
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 9.2e-153 543.9 361 79.2
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 9.2e-153 543.9 336 84.2
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.1e-152 542.7 411 73.2
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 2.1e-152 542.7 332 84.3
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 2.7e-152 542.3 332 83.7
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.7e-152 542.3 348 81.6
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.7e-152 542.3 348 81.6
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 3.5e-152 542.0 363 78.2
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 4.6e-152 541.6 345 82.3
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 6.0e-152 541.2 375 76.0
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 7.8e-152 540.8 332 84.3
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.0e-151 540.4 360 80.0
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.0e-151 540.4 334 82.9
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.0e-151 540.4 341 80.1
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.3e-151 540.0 347 81.6
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.3e-151 540.0 332 84.0
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.3e-151 540.0 334 83.2
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 2.3e-151 539.3 335 83.0
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 2.3e-151 539.3 336 83.0
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 6.6e-151 537.7 361 78.1
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 1.5e-150 536.6 370 78.1
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.9e-150 536.2 358 79.1
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.9e-150 536.2 358 79.1
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 4.3e-150 535.0 337 81.9
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 4.3e-150 535.0 338 82.0
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 9.5e-150 533.9 334 82.9
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 1.6e-149 533.1 333 82.6
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.1e-149 532.7 358 78.5
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.1e-149 532.7 358 78.5
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.1e-149 532.7 358 78.8
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 4.7e-149 531.6 371 76.5
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 4.7e-149 531.6 370 77.6
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.4e-148 530.0 327 84.1
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 4.4e-147 525.0 297 89.6
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 4.9e-146 521.5 334 80.2
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 4.9e-146 521.5 335 80.6
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 8.4e-146 520.8 342 78.1
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.9e-145 519.6 325 82.8
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 1.9e-145 519.6 329 80.9
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 7.1e-145 517.7 342 77.2
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 7.1e-145 517.7 334 80.5
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.1e-144 516.2 332 81.0
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.7e-144 515.8 331 79.2
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 7.8e-144 514.2 343 79.0
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 3.0e-143 512.3 357 76.2
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 6.6e-143 511.1 344 79.4
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.5e-142 509.2 297 87.9
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 9.6e-142 507.3 297 86.9
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 3.6e-141 505.4 360 76.9
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.4e-140 502.7 368 72.0
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 3.4e-139 498.8 330 77.9
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 2.9e-138 495.7 363 74.1
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 8.4e-138 494.2 297 85.5
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 8.4e-138 494.2 360 73.3
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.7e-136 489.2 377 71.4
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.0e-135 487.3 327 76.1
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.8e-132 476.5 336 72.6
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 9.9e-131 470.7 313 78.3
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 3.8e-130 468.8 314 78.7
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 2.4e-129 466.1 310 79.4
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.1e-124 450.7 417 60.9
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 6.9e-124 448.0 348 68.7
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 3.8e-122 442.2 272 87.5
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 3.5e-120 435.6 337 71.2
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.5e-115 420.2 246 89.4
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 7.1e-113 411.4 333 66.1
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.6e-112 410.2 346 67.6
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.3e-106 390.6 350 60.0
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.6e-104 383.6 285 67.7
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 4.3e-102 375.6 280 72.1
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 4.2e-97 359.0 353 56.4
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.6e-88 329.3 198 86.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 8.0e-80 301.6 198 81.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 8.0e-80 301.6 198 81.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 4.5e-75 285.8 166 86.7
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.2e-64 251.1 294 46.6
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.6e-64 249.6 356 47.8
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 8.6e-58 228.4 308 42.5
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 5.2e-55 219.2 327 41.6
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.5e-54 217.6 129 83.7
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.9e-52 210.7 161 72.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 9.5e-49 198.4 197 61.4
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.7e-48 196.1 178 63.5
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.9e-38 161.8 149 60.4
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.1e-36 156.4 213 47.9
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 3.8e-29 133.3 80 82.5
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.7e-26 124.4 124 56.5
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 8.7e-26 122.1 86 72.1
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 2.1e-16 90.9 75 65.3
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 5.8e-14 82.8 64 71.9
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.1e-12 78.6 48 83.3
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 1.9e-12 77.8 90 51.1
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 8.7e-10 68.9 80 51.2
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.1e-09 68.6 42 71.4
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 8.1e-08 62.4 43 74.4


User provided reference genes

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