Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 2032.7 1018 100.0
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1932.9 1018 95.3
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1776.9 1018 87.0
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1732.2 1019 85.6
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1722.6 1018 84.3
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1719.9 1019 84.4
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1699.5 1019 83.8
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1678.7 1020 83.5
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1678.3 1019 82.9
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1588.2 1016 77.9
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1581.2 1016 77.5
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1507.3 1018 74.1
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1462.6 1022 72.3
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1459.9 1083 69.4
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1453.0 1019 71.6
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1447.6 1017 71.9
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1444.1 990 72.9
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1442.2 1017 71.4
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1439.5 1019 71.1
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1437.9 1023 71.4
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1436.8 1019 71.0
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1433.3 1017 71.0
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1429.1 1019 70.5
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1423.3 1019 69.6
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1420.2 1018 69.9
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1417.5 1001 71.2
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1414.8 1001 71.1
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1414.1 1019 70.3
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1395.9 1021 69.6
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1391.7 1020 69.3
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1382.9 1019 68.3
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1372.1 1019 68.5
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1363.2 1016 66.6
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1345.9 1019 66.8
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1345.9 995 68.0
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1343.9 1019 66.8
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1342.0 1018 66.5
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1334.7 1019 66.4
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1333.2 1019 66.4
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1332.8 1081 64.1
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1325.1 1018 66.5
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1323.9 1007 66.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1300.8 1067 63.2
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1298.1 1015 65.6
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1297.0 1020 64.7
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1281.5 1018 63.2
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1273.8 1038 63.0
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1272.3 995 64.4
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 0.0e+00 1255.0 753 83.0
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1250.7 1021 62.5
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1247.3 1017 62.0
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1247.3 1020 61.9
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1245.0 1027 61.8
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1239.9 1019 62.3
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1238.0 1013 62.9
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1227.6 1025 62.0
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1225.7 1019 61.2
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1218.4 1022 61.5
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1217.6 1019 60.7
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1216.4 1017 61.1
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1216.1 1017 61.3
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1214.9 1022 61.5
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1213.4 1022 61.4
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1208.7 1015 61.4
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1204.5 1022 61.1
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1201.4 1023 59.9
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1197.6 1023 60.6
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1194.5 1021 60.6
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1193.7 1033 60.2
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1193.7 1023 60.6
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1192.9 1021 60.6
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1192.9 1020 60.4
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1187.9 1023 60.1
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1186.4 1017 59.9
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1184.1 1023 60.2
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1184.1 1023 60.2
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1174.5 1011 59.8
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1166.0 1012 60.1
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1156.4 779 74.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1152.9 1022 59.1
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1124.4 1018 57.4
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1123.6 989 59.6
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1109.0 782 72.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 8.4e-311 1070.5 802 68.5
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 1.6e-306 1056.2 1022 55.4
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 2.5e-299 1032.3 1031 53.6
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.3e-292 1010.0 1024 53.7
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 2.6e-277 959.1 697 69.7
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 3.7e-263 912.1 977 51.1
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.7e-261 906.0 616 73.7
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 6.8e-257 891.3 600 74.0
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 4.1e-238 828.9 779 54.3
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-234 817.4 1037 44.2
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 8.0e-234 814.7 1004 46.6
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 4.9e-231 805.4 1039 43.9
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 8.9e-217 758.1 877 47.9
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 3.4e-216 756.1 1009 44.4
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.8e-202 709.9 510 68.8
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.1e-195 688.0 561 63.3
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 6.2e-194 682.2 550 62.0
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 4.3e-187 659.4 459 73.9
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 2.9e-183 646.7 430 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 3.3e-179 633.3 1050 38.3
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.7e-175 620.9 1041 38.6
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 3.3e-171 606.7 432 70.1
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 6.3e-170 602.4 527 61.1
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.0e-168 597.4 578 56.4
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 5.0e-159 566.2 512 56.1
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 3.9e-156 556.6 1029 34.8
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.3e-146 525.0 512 53.9
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 4.2e-142 510.0 459 54.0
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 6.8e-140 502.7 640 45.0
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.6e-115 421.0 427 53.2
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.1e-108 399.1 532 43.8
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.6e-107 394.4 242 80.6
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 7.5e-107 392.9 1079 28.7
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.9e-105 388.3 297 64.6
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 2.3e-103 381.3 271 73.1
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.8e-100 371.7 242 77.7
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 3.8e-74 284.3 461 39.9
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.5e-67 262.3 333 43.8
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.4e-67 261.2 315 44.1
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 9.3e-65 253.1 316 43.4
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 5.5e-57 227.3 401 41.4
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 3.8e-50 204.5 400 35.8
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 5.5e-49 200.7 400 35.8
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-43 182.6 424 34.9
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 2.6e-43 181.8 167 62.3
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 2.6e-43 181.8 167 62.3
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 7.7e-43 180.3 115 80.9
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 1.3e-42 179.5 771 24.8
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-41 176.4 424 34.2
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 7.2e-41 173.7 813 25.0
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-36 158.7 250 40.0
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-34 152.9 313 37.1
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 5.5e-33 147.5 689 24.1
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 4.7e-32 144.4 399 30.8
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 9.7e-30 136.7 167 51.5
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.3e-29 136.3 154 47.4
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 2.0e-27 129.0 121 62.8
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 3.6e-24 118.2 127 58.3
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 6.1e-24 117.5 160 39.4
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 6.8e-23 114.0 76 69.7
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 2.6e-22 112.1 81 75.3
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 5.9e-19 100.9 195 36.4
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 2.3e-18 99.0 89 53.9
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 2.3e-15 89.0 179 31.3
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 9.8e-14 83.6 51 72.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 2.8e-13 82.0 46 80.4
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 3.7e-13 81.6 59 78.0
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.4e-12 79.7 49 71.4
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 2.9e-10 72.0 95 40.0
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 5.6e-09 67.8 452 21.7
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 8.0e-08 63.9 75 53.3
PSO782G3231 Papaver somniferum HOM05D023650 ORTHO05D026023 1.2e-06 60.1 60 43.3


User provided reference genes

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