Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.0e-254 882.9 437 100.0
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 4.5e-242 840.9 440 93.9
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 5.5e-224 780.8 440 87.5
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 2.5e-208 728.8 442 80.8
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.2e-207 726.5 440 81.1
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 4.7e-207 724.5 440 80.7
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 6.8e-206 720.7 443 80.4
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.6e-202 709.5 444 78.4
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.8e-198 696.0 445 78.4
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 6.8e-198 694.1 444 78.8
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 5.8e-197 691.0 462 75.1
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 6.4e-180 634.4 450 70.2
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.4e-179 633.3 335 89.0
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 6.0e-178 627.9 383 76.2
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 6.0e-178 627.9 380 75.8
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 6.0e-178 627.9 383 76.0
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 6.0e-178 627.9 383 75.7
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 7.8e-178 627.5 384 76.3
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.3e-177 626.7 384 76.0
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 2.3e-177 625.9 335 89.0
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 6.6e-177 624.4 414 71.3
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 3.3e-176 622.1 414 71.5
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 5.6e-176 621.3 436 68.1
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 7.3e-176 620.9 384 75.3
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 7.3e-176 620.9 383 75.5
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 9.5e-176 620.5 384 75.3
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 1.2e-175 620.2 380 75.3
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.6e-175 619.8 423 70.7
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.6e-175 618.6 384 73.2
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.4e-174 615.9 383 74.2
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 4.0e-174 615.1 464 64.9
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 4.0e-174 615.1 378 74.6
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 3.4e-173 612.1 453 67.5
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 3.4e-173 612.1 458 67.5
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 9.9e-173 610.5 462 65.8
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 1.3e-172 610.1 459 67.1
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 1.3e-172 610.1 405 71.6
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 2.2e-172 609.4 402 72.4
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 4.9e-172 608.2 396 72.0
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 8.4e-172 607.4 455 66.6
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.4e-171 606.7 456 65.8
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.9e-171 606.3 433 69.3
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 2.4e-171 605.9 380 74.7
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.4e-171 605.9 454 65.9
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 3.2e-171 605.5 442 66.1
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.2e-171 605.5 456 65.1
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 4.2e-171 605.1 458 67.2
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 4.2e-171 605.1 456 65.8
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.2e-170 603.6 385 72.7
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.3e-169 599.4 381 73.5
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 3.0e-169 599.0 384 74.0
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 7.3e-168 594.3 434 67.1
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 7.3e-168 594.3 428 67.8
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 9.6e-168 594.0 363 75.5
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 4.7e-167 591.7 404 71.3
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 6.2e-167 591.3 434 66.6
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 8.1e-167 590.9 453 66.2
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 5.3e-166 588.2 384 71.6
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.2e-165 587.0 400 69.5
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.5e-165 586.6 381 71.7
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 3.4e-165 585.5 384 71.1
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 7.6e-165 584.3 384 70.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.9e-163 579.7 454 64.5
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 5.4e-163 578.2 384 71.4
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 5.4e-163 578.2 385 71.4
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.6e-162 576.6 384 70.1
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 3.5e-162 575.5 448 65.0
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 7.8e-162 574.3 384 69.8
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.0e-161 573.9 396 69.4
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.0e-161 573.9 385 69.6
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.7e-161 573.2 384 72.9
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 4.3e-160 568.5 334 78.4
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 4.3e-160 568.5 444 65.3
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.3e-159 567.0 386 71.0
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.1e-159 566.2 419 66.6
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 8.1e-159 564.3 384 67.4
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 9.0e-158 560.8 384 68.8
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.5e-157 560.1 412 66.5
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 2.0e-157 559.7 405 68.6
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 3.4e-157 558.9 384 68.0
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 7.6e-157 557.8 411 65.0
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.9e-155 553.1 460 61.1
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 2.1e-154 549.7 507 57.4
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.5e-152 542.7 404 65.3
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 3.7e-151 538.9 368 67.4
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.0e-149 533.1 368 66.6
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 3.4e-149 532.3 366 66.1
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 3.2e-147 525.8 378 69.0
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 2.1e-143 513.1 397 63.2
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 5.3e-142 508.4 407 62.2
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 4.2e-139 498.8 384 64.3
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.8e-137 493.4 440 60.0
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 7.4e-136 488.0 419 59.7
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.6e-135 486.9 426 58.9
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.4e-134 483.0 318 69.2
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 1.3e-132 477.2 388 62.1
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.2e-130 470.7 454 54.6
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 5.7e-128 461.8 281 76.9
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.8e-121 440.3 443 54.9
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 4.4e-120 435.6 358 57.5
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 7.0e-118 428.3 416 54.6
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.0e-117 426.8 443 53.0
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.0e-116 424.5 209 97.1
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 2.9e-116 422.9 383 56.1
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.3e-111 407.5 259 72.6
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.4e-110 403.3 381 55.1
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 2.2e-108 396.7 238 83.2
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.1e-102 377.9 262 67.9
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.8e-95 353.2 216 76.9
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 3.0e-89 333.2 297 58.2
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.5e-88 330.9 384 44.8
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.1e-86 324.7 225 66.7
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 3.2e-86 323.2 361 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 5.8e-80 302.4 359 42.9
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 6.4e-79 298.9 178 80.3
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 9.2e-78 295.0 172 81.4
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 6.8e-73 278.9 279 47.3
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 5.8e-72 275.8 243 58.8
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 2.9e-71 273.5 320 49.1
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.9e-71 272.7 175 69.7
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.1e-70 271.6 244 57.8
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 2.1e-61 240.7 176 64.8
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 9.3e-54 215.3 145 71.7
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 4.6e-53 213.0 297 41.8
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.9e-44 183.3 238 46.2
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 6.9e-41 172.6 96 83.3
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.5e-35 154.8 88 77.3
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 7.6e-32 142.5 224 41.5
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 8.4e-31 139.0 73 89.0
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 2.1e-29 134.4 140 52.1
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.5e-27 128.3 364 32.1
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 1.3e-26 125.2 144 48.6
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.1e-22 112.1 74 74.3
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.6e-21 108.2 125 44.8
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 6.3e-18 96.3 69 65.2
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 5.5e-14 83.2 71 57.7
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 7.9e-13 79.3 63 61.9
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 4.3e-11 73.6 81 40.7
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 5.3e-09 66.6 38 76.3
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 2.0e-08 64.7 39 71.8
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 1.7e-07 61.6 29 96.6
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 1.7e-07 61.6 77 41.6


User provided reference genes

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