Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 4.0e-159 564.7 281 100.0
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 2.0e-142 509.2 278 92.8
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.5e-97 360.1 277 70.4
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 9.4e-92 340.9 279 67.7
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 5.7e-73 278.5 277 57.8
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 8.3e-72 274.6 288 55.6
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 2.2e-64 250.0 212 63.7
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 1.8e-63 246.9 279 54.5
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 1.6e-54 217.2 243 54.7
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 1.1e-52 211.1 269 50.6
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.5e-52 210.7 230 56.5
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 2.5e-52 209.9 209 55.0
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.2e-51 207.6 209 54.1
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 1.2e-51 207.6 209 54.1
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 4.7e-51 205.7 229 52.0
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 6.0e-46 188.7 213 51.6
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 1.3e-45 187.6 272 46.3
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 4.3e-44 182.6 220 51.4
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 2.6e-41 173.3 213 48.8
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 2.9e-40 169.9 209 48.3
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 3.0e-37 159.8 193 49.7
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 3.1e-34 149.8 299 35.1
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.7e-32 144.1 306 35.0
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 2.2e-32 143.7 306 36.6
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.9e-31 140.6 321 35.5
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 7.1e-31 138.7 301 34.6
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 7.8e-30 135.2 300 34.7
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.3e-29 134.4 299 33.8
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.7e-29 134.0 300 33.7
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.9e-29 132.9 301 34.2
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 3.9e-29 132.9 302 33.8
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 6.6e-29 132.1 275 36.7
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 2.5e-28 130.2 300 33.3
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.5e-28 130.2 302 35.1
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 4.7e-27 125.9 301 31.6
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 6.2e-27 125.6 303 32.3
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.1e-26 124.8 311 34.4
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.4e-26 123.6 254 38.2
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 2.6e-25 120.2 242 37.2
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.4e-25 119.8 303 32.7
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 2.9e-24 116.7 204 38.7
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 4.9e-24 115.9 316 32.3
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.1e-23 114.8 259 35.9
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.9e-23 114.0 271 33.9
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.2e-23 113.2 157 43.9
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 5.4e-23 112.5 302 31.8
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 7.1e-23 112.1 211 37.4
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 9.3e-23 111.7 278 33.1
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 1.2e-22 111.3 229 35.8
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.5e-20 104.4 216 34.7
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 5.6e-20 102.4 266 34.2
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 9.6e-20 101.7 271 29.5
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 6.2e-19 99.0 297 30.3
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 2.4e-18 97.1 109 46.8
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 2.4e-18 97.1 295 29.5
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 4.0e-18 96.3 181 38.1
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 4.0e-18 96.3 181 38.1
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 5.3e-18 95.9 294 29.3
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 1.5e-17 94.4 156 39.7
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 4.5e-17 92.8 117 43.6
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 7.6e-17 92.0 194 37.1
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 2.2e-16 90.5 208 35.1
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.9e-16 90.1 202 34.7
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 2.9e-16 90.1 318 29.2
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 3.8e-16 89.7 167 37.7
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 4.9e-16 89.4 113 46.9
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 2.1e-14 84.0 222 32.9
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.1e-14 84.0 200 33.5
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 3.5e-14 83.2 202 33.7
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 3.5e-14 83.2 202 33.7
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 3.5e-14 83.2 300 29.0
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.5e-14 83.2 193 32.6
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 4.6e-14 82.8 210 32.4
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.0e-13 81.6 203 34.0
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 1.3e-13 81.3 101 40.6
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 1.8e-13 80.9 140 41.4
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 1.8e-13 80.9 297 28.3
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 2.3e-13 80.5 204 32.4
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 3.0e-13 80.1 266 28.9
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 3.9e-13 79.7 200 32.0
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 3.9e-13 79.7 204 33.3
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 6.7e-13 79.0 201 32.3
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 1.1e-12 78.2 202 32.7
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 1.9e-12 77.4 245 29.4
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.9e-12 77.4 228 27.6
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 2.5e-12 77.0 199 32.7
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 2.5e-12 77.0 199 32.7
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 2.5e-12 77.0 199 32.7
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 2.5e-12 77.0 201 31.8
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 3.3e-12 76.6 210 30.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 3.3e-12 76.6 228 28.5
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 4.3e-12 76.3 126 38.1
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 9.6e-12 75.1 229 28.8
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 1.3e-11 74.7 203 32.5
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.3e-11 74.7 197 30.5
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 1.3e-11 74.7 215 29.3
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 1.6e-11 74.3 95 43.2
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 3.7e-11 73.2 197 29.9
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 3.7e-11 73.2 217 27.6
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 4.8e-11 72.8 233 27.9
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 8.1e-11 72.0 195 30.8
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 8.1e-11 72.0 211 28.0
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 8.1e-11 72.0 127 37.8
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 8.1e-11 72.0 197 29.9
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 1.1e-10 71.6 125 35.2
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 1.4e-10 71.2 197 29.4
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.4e-10 71.2 197 29.4
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 4.0e-10 69.7 196 30.6
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 6.9e-10 68.9 204 28.4
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 1.5e-09 67.8 119 37.0
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.6e-09 67.0 155 34.8
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 5.8e-09 65.9 165 32.7
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 5.8e-09 65.9 212 28.3
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 5.8e-09 65.9 198 29.8
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 3.8e-08 63.2 107 34.6
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 3.8e-08 63.2 197 27.9
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 3.8e-08 63.2 88 44.3
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 3.8e-08 63.2 92 40.2
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 4.9e-08 62.8 118 35.6
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 6.4e-08 62.4 132 34.1
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 1.1e-07 61.6 109 35.8
Carub.0008s2496 Capsella rubella HOM05D003662 ORTHO05D001824 1.4e-07 61.2 221 27.6
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 1.9e-07 60.8 115 35.7
BcaC01g02674 Brassica carinata HOM05D003662 ORTHO05D001824 2.4e-07 60.5 220 25.9
C03p62080 Brassica napus HOM05D003662 ORTHO05D001824 2.4e-07 60.5 220 25.9
BolC3t18469H Brassica oleracea HOM05D003662 ORTHO05D001824 2.4e-07 60.5 220 25.9
BcaB07g29728 Brassica carinata HOM05D003662 ORTHO05D001824 3.2e-07 60.1 268 25.7
A06p30890 Brassica napus HOM05D003662 ORTHO05D001824 3.2e-07 60.1 132 33.3
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 3.2e-07 60.1 260 27.3
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 4.2e-07 59.7 85 44.7
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 4.2e-07 59.7 85 44.7
BcaB02g09780 Brassica carinata HOM05D003662 ORTHO05D001824 5.5e-07 59.3 204 26.5
BraA06t26028Z Brassica rapa HOM05D003662 ORTHO05D001824 5.5e-07 59.3 205 26.3
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 5.5e-07 59.3 167 31.7
Sp2g27230 Schrenkiella parvula HOM05D003662 ORTHO05D001824 9.3e-07 58.5 206 29.1
Lsat_1_v5_gn_1_114861 Lactuca sativa HOM05D004414 ORTHO05D001824 1.2e-06 58.2 110 33.6
Zm00001eb018850 Zea mays HOM05D003662 ORTHO05D001824 1.2e-06 58.2 140 32.9
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.6e-06 57.8 94 41.5
PSO781G0010 Papaver somniferum HOM05D003662 ORTHO05D001824 2.7e-06 57.0 217 24.9
Thhalv10003831m.g Eutrema salsugineum HOM05D003662 ORTHO05D001824 4.6e-06 56.2 259 26.3
QL11p020558 Quercus lobata HOM05D003662 ORTHO05D001824 4.6e-06 56.2 140 32.9
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 6.0e-06 55.8 87 36.8


User provided reference genes

Program Settings