Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 5.4e-53 210.7 104 100.0
Glyma.12G071500 Glycine max HOM05D007887 ORTHO05D009725 1.1e-37 159.8 104 79.8
Phvul.011G072900 Phaseolus vulgaris HOM05D007887 ORTHO05D009725 8.4e-22 107.1 105 62.9
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 1.4e-21 106.3 105 61.9
Psat7g222640 Pisum sativum HOM05D007887 ORTHO05D009725 7.9e-20 100.5 110 59.1
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 2.3e-19 99.0 102 62.7
Lj3g0000190 Lotus japonicus HOM05D007887 ORTHO05D009725 1.1e-18 96.7 109 57.8
TPR.G36408 Trifolium pratense HOM05D007887 ORTHO05D009725 1.1e-18 96.7 107 56.1
Lalb_Chr03g0027141 Lupinus albus HOM05D007887 ORTHO05D009725 1.3e-17 93.2 105 58.1
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 1.1e-16 90.1 105 54.3
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 4.1e-16 88.2 105 55.2
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 1.2e-15 86.7 104 56.7
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 1.5e-15 86.3 105 54.3
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 2.0e-15 85.9 104 56.7
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 2.6e-15 85.5 107 54.2
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 4.5e-15 84.7 104 51.0
arahy.Tifrunner.gnm1.ann1.VU6S4B Arachis hypogaea HOM05D007887 ORTHO05D009725 5.9e-15 84.3 73 64.4
Glyma.13G328200 Glycine max HOM05D007887 ORTHO05D009725 5.9e-15 84.3 105 49.5
arahy.Tifrunner.gnm1.ann1.ZKT7Q5 Arachis hypogaea HOM05D007887 ORTHO05D009725 1.3e-14 83.2 73 64.4
arahy.Tifrunner.gnm1.ann1.5EA918 Arachis hypogaea HOM05D007887 ORTHO05D009725 2.2e-14 82.4 73 63.0
Lj3g0011826 Lotus japonicus HOM05D007887 ORTHO05D009725 2.9e-14 82.0 110 54.5
arahy.Tifrunner.gnm1.ann1.QG78WL Arachis hypogaea HOM05D007887 ORTHO05D009725 3.8e-14 81.6 73 63.0
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 8.5e-14 80.5 104 52.9
Ca_01431_v3 Cicer arietinum L. HOM05D007887 ORTHO05D009725 1.1e-13 80.1 98 51.0
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 1.4e-13 79.7 106 55.7
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 1.4e-13 79.7 104 51.0
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 1.9e-13 79.3 104 49.0
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 3.2e-13 78.6 107 53.3
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 7.2e-13 77.4 107 54.2
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 7.2e-13 77.4 107 44.9
Aqoxy1G00528 Aquilegia oxysepala HOM05D007887 ORTHO05D009725 1.6e-12 76.3 105 47.6
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 2.7e-12 75.5 107 53.3
arahy.Tifrunner.gnm1.ann1.N776CK Arachis hypogaea HOM05D007887 ORTHO05D009725 3.6e-12 75.1 124 45.2
GSVIVG01025148001 Vitis vinifera HOM05D007887 ORTHO05D009725 3.6e-12 75.1 104 50.0
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 4.6e-12 74.7 107 52.3
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 6.1e-12 74.3 84 50.0
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.4e-11 73.2 107 52.3
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 1.1e-10 70.1 92 51.1
TPR.G11627 Trifolium pratense HOM05D007887 ORTHO05D009725 2.0e-10 69.3 98 52.0
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 1.1e-08 63.5 106 44.3
Eucgr.J00947 Eucalyptus grandis HOM05D007887 ORTHO05D009725 1.8e-08 62.8 50 62.0
PGSC0003DMG400008069 Solanum tuberosum HOM05D023935 ORTHO05D009725 1.8e-08 62.8 102 46.1
C02p11720 Brassica napus HOM05D007887 ORTHO05D009725 2.4e-08 62.4 104 42.3
CANSAT54G2812 Cannabis sativa HOM05D007887 ORTHO05D009725 2.4e-08 62.4 85 42.4
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 3.1e-08 62.0 116 42.2
Sopen11g027840 Solanum pennellii HOM05D023935 ORTHO05D009725 3.1e-08 62.0 102 45.1
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 4.1e-08 61.6 98 40.8
AL8G37010 Arabidopsis lyrata HOM05D007887 ORTHO05D009725 6.9e-08 60.8 98 41.8
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 1.2e-07 60.1 104 43.3
BolC3t13748H Brassica oleracea HOM05D007887 ORTHO05D009725 1.2e-07 60.1 98 39.8
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 1.2e-07 60.1 104 41.3
BolC9t58177H Brassica oleracea HOM05D007887 ORTHO05D009725 1.5e-07 59.7 100 40.0
DCAR_017079 Daucus carota HOM05D007887 ORTHO05D009725 1.5e-07 59.7 47 61.7
A10p17620 Brassica napus HOM05D007887 ORTHO05D009725 2.6e-07 58.9 100 40.0
BraA10t43842Z Brassica rapa HOM05D007887 ORTHO05D009725 2.6e-07 58.9 100 40.0
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 2.6e-07 58.9 89 40.4
Solyc11g069110.2 Solanum lycopersicum HOM05D023935 ORTHO05D009725 2.6e-07 58.9 102 45.1
Solyc11g069115.1 Solanum lycopersicum HOM05D023935 ORTHO05D009725 3.4e-07 58.5 102 44.1
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 4.5e-07 58.2 100 40.0
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 4.5e-07 58.2 100 40.0
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 4.5e-07 58.2 104 42.3
Lalb_Chr22g0350191 Lupinus albus HOM05D007887 ORTHO05D009725 5.9e-07 57.8 105 44.8
Ciclev10029602m.g Citrus clementina HOM05D007887 ORTHO05D009725 7.7e-07 57.4 43 67.4
BraA02t05732Z Brassica rapa HOM05D007887 ORTHO05D009725 1.0e-06 57.0 108 40.7
BcaB08g36339 Brassica carinata HOM05D007887 ORTHO05D009725 1.3e-06 56.6 100 39.0
Prupe.6G096000 Prunus persica HOM05D007887 ORTHO05D009725 1.7e-06 56.2 85 45.9
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 2.2e-06 55.8 96 39.6
HanXRQChr13g0404441 Helianthus annuus HOM05D007887 ORTHO05D009725 2.2e-06 55.8 50 54.0
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 2.9e-06 55.5 101 41.6
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 2.9e-06 55.5 98 36.7
Carub.0008s2111 Capsella rubella HOM05D007887 ORTHO05D009725 3.8e-06 55.1 98 36.7
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 3.8e-06 55.1 38 65.8
Gohir.A13G220700 Gossypium hirsutum HOM05D037992 ORTHO05D009725 3.8e-06 55.1 59 49.2
BcaB05g22638 Brassica carinata HOM05D007887 ORTHO05D009725 5.0e-06 54.7 104 41.3
CDE09G0302 Ceratophyllum demersum HOM05D041108 ORTHO05D009725 8.5e-06 53.9 44 54.5


User provided reference genes

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