Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 3.6e-227 791.2 389 100.0
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.1e-186 656.8 395 83.5
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.7e-182 642.1 390 80.5
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 8.3e-155 550.8 415 69.6
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 2.4e-154 549.3 412 69.2
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 9.1e-154 547.4 414 69.3
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 5.0e-152 541.6 406 68.2
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.7e-145 519.2 368 73.1
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.3e-139 500.4 414 65.2
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 2.3e-136 489.6 387 64.1
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 3.9e-136 488.8 365 66.0
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 3.3e-135 485.7 369 66.7
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 4.4e-132 475.3 415 61.9
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 7.5e-132 474.6 414 61.8
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 5.1e-128 461.8 368 63.0
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 6.6e-128 461.5 385 59.7
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.6e-127 458.4 368 64.1
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 2.8e-126 456.1 393 59.3
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 6.2e-126 454.9 392 58.7
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 8.9e-125 451.1 370 60.8
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 5.8e-124 448.4 379 60.9
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 7.6e-124 448.0 376 60.1
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 1.7e-123 446.8 394 60.4
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 2.2e-123 446.4 376 60.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 8.3e-123 444.5 399 56.4
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.1e-122 444.1 398 58.0
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.2e-121 440.7 380 59.5
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 3.5e-121 439.1 400 57.5
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 7.8e-121 438.0 386 57.8
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 3.9e-120 435.6 382 59.7
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 5.1e-120 435.3 393 56.5
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 6.6e-120 434.9 374 58.8
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 8.6e-120 434.5 388 57.5
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 1.9e-119 433.3 384 57.3
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 9.6e-119 431.0 396 58.3
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 1.2e-118 430.6 402 54.0
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 3.6e-118 429.1 365 59.5
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 1.5e-116 423.7 391 56.3
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 2.0e-116 423.3 397 56.2
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 2.6e-116 422.9 395 55.2
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 7.6e-116 421.4 396 54.8
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 1.7e-115 420.2 397 55.9
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 2.2e-115 419.9 403 53.8
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 2.2e-115 419.9 397 55.9
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 4.9e-115 418.7 373 56.8
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 2.3e-112 409.8 381 55.6
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 2.3e-112 409.8 399 53.6
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.9e-111 406.8 382 55.0
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 3.3e-111 406.0 389 54.8
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 1.3e-110 404.1 380 55.5
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.6e-110 403.7 407 52.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 3.6e-110 402.5 430 51.6
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 8.1e-110 401.4 405 53.1
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.4e-109 400.6 356 55.9
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 9.0e-109 397.9 346 58.7
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 9.0e-109 397.9 421 51.3
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.5e-108 397.1 376 56.1
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 2.0e-108 396.7 367 53.7
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 2.6e-108 396.4 387 54.0
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 4.4e-108 395.6 380 54.7
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.3e-107 394.0 367 55.0
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.3e-107 394.0 371 56.6
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 2.2e-107 393.3 381 54.3
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 6.4e-107 391.7 379 55.7
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 1.4e-106 390.6 367 54.2
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 1.4e-106 390.6 358 55.6
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.9e-106 390.2 292 62.0
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 3.2e-106 389.4 368 54.9
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 7.1e-106 388.3 380 53.7
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 1.2e-105 387.5 380 54.2
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.1e-105 386.7 268 66.8
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 7.8e-105 384.8 388 53.4
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.3e-104 384.0 389 53.0
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 2.3e-104 383.3 377 53.8
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 2.3e-104 383.3 368 54.3
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 3.0e-104 382.9 373 52.5
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 3.0e-104 382.9 371 53.9
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.5e-103 380.6 390 51.5
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.3e-102 377.5 364 53.8
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.6e-102 377.1 340 58.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.8e-102 376.3 386 51.3
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 2.8e-102 376.3 375 54.4
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 8.1e-102 374.8 381 52.0
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 3.1e-101 372.9 410 49.8
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.0e-101 372.5 362 54.4
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 6.9e-101 371.7 382 50.8
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 9.3e-98 361.3 392 50.0
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 7.9e-97 358.2 370 49.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.8e-96 357.1 348 54.6
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.0e-96 356.3 302 62.6
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 3.0e-96 356.3 352 54.3
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.1e-95 354.4 352 51.7
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 3.3e-95 352.8 355 49.6
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 4.3e-95 352.4 355 51.5
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 2.1e-94 350.1 407 49.4
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 8.1e-94 348.2 360 50.3
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.4e-93 347.4 397 46.3
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 4.0e-93 345.9 347 53.0
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 3.4e-92 342.8 398 48.5
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 1.3e-91 340.9 257 63.0
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.7e-91 340.5 287 58.5
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 4.9e-91 339.0 356 50.6
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.5e-90 336.7 199 78.9
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 2.1e-86 323.6 236 60.6
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.2e-84 317.8 270 56.3
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 5.8e-84 315.5 366 49.7
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 7.6e-84 315.1 357 46.8
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 7.6e-84 315.1 293 59.0
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.1e-82 311.2 371 49.3
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.1e-82 311.2 363 48.5
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 3.0e-80 303.1 321 46.7
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-78 297.4 277 49.8
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 8.2e-78 295.0 277 49.5
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.4e-77 294.3 253 68.8
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 6.9e-77 292.0 322 46.0
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 3.0e-72 276.6 364 41.2
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 4.5e-68 262.7 279 53.4
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 4.5e-68 262.7 198 62.1
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 3.0e-64 250.0 275 43.6
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.1e-63 248.1 153 75.2
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 7.7e-60 235.3 179 59.2
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 8.5e-59 231.9 178 61.2
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.2e-51 207.2 202 53.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 2.0e-47 194.1 218 50.0
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.9e-43 180.3 222 47.3
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 1.2e-36 158.3 110 66.4
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 1.7e-35 154.5 113 60.2
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 3.8e-35 153.3 113 61.9
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 3.3e-34 150.2 113 60.2
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 4.1e-29 133.3 127 51.2
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.9e-26 124.4 107 54.2
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 4.3e-26 123.2 85 64.7
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.6e-26 122.9 100 53.0
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.4e-24 118.2 100 50.0
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.3e-22 111.7 89 58.4
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 4.9e-22 109.8 155 50.3
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 4.6e-20 103.2 101 55.4
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.0e-19 100.5 109 43.1
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.9e-19 100.1 98 54.1
VMungo1080G0356 Vigna mungo HOM05D005177 ORTHO05D006175 6.6e-19 99.4 100 64.0
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.3e-10 70.1 43 76.7
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 5.6e-10 69.7 42 73.8
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 3.6e-09 67.0 119 42.9
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 5.2e-08 63.2 143 41.3


User provided reference genes

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