Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 1.8e-63 245.7 120 100.0
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 8.5e-42 173.7 99 85.9
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 1.6e-40 169.5 99 81.8
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 3.3e-38 161.8 96 81.2
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 3.3e-38 161.8 99 78.8
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 4.4e-38 161.4 99 81.8
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 3.7e-37 158.3 99 81.8
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 4.5e-35 151.4 97 73.2
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 4.4e-30 134.8 99 69.7
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 1.3e-29 133.3 100 65.0
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 1.8e-28 129.4 100 63.0
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 5.5e-25 117.9 99 63.6
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 3.6e-24 115.2 103 61.2
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 8.8e-23 110.5 103 57.3
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 8.8e-23 110.5 70 72.9
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 3.3e-22 108.6 103 56.3
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 9.7e-22 107.1 106 56.6
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 9.7e-22 107.1 106 56.6
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 4.8e-21 104.8 88 61.4
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 1.4e-20 103.2 106 54.7
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 1.6e-19 99.8 109 47.7
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 4.5e-19 98.2 105 54.3
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 4.5e-19 98.2 106 55.7
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 1.0e-18 97.1 105 53.3
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 1.3e-18 96.7 89 53.9
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 1.3e-18 96.7 105 53.3
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 1.7e-18 96.3 103 52.4
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 1.7e-18 96.3 79 62.0
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 2.9e-18 95.5 101 49.5
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 6.5e-18 94.4 100 53.0
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 8.5e-18 94.0 101 51.5
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 8.5e-18 94.0 100 51.0
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 1.1e-17 93.6 106 50.9
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 4.2e-17 91.7 71 64.8
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 9.4e-17 90.5 113 46.0
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 1.6e-16 89.7 99 51.5
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 2.1e-16 89.4 102 47.1
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 2.7e-16 89.0 99 49.5
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 3.6e-16 88.6 99 53.5
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 3.6e-16 88.6 99 53.5
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 3.6e-16 88.6 88 53.4
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 6.1e-16 87.8 91 51.6
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 6.1e-16 87.8 89 52.8
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 8.0e-16 87.4 110 47.3
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 8.0e-16 87.4 94 55.3
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 1.8e-15 86.3 69 60.9
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 3.0e-15 85.5 101 46.5
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 3.0e-15 85.5 88 52.3
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 2.6e-14 82.4 89 50.6
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 3.4e-14 82.0 70 60.0
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 5.7e-14 81.3 67 59.7
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 5.7e-14 81.3 64 57.8
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 9.8e-14 80.5 64 60.9
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.3e-13 80.1 64 57.8
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.3e-13 80.1 78 51.3
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.3e-13 80.1 64 60.9
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 6.3e-13 77.8 99 47.5
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 1.4e-12 76.6 86 46.5
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 1.8e-12 76.3 105 41.9
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 4.1e-12 75.1 66 56.1
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 4.1e-12 75.1 64 57.8
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 1.2e-11 73.6 100 42.0
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 3.8e-10 68.6 86 46.5
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 6.6e-10 67.8 62 56.5
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.5e-09 66.6 64 56.2
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 1.9e-09 66.2 64 50.0
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 2.5e-09 65.9 64 51.6
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 3.3e-09 65.5 65 49.2
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 4.2e-09 65.1 69 47.8
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 5.5e-09 64.7 64 50.0
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 5.5e-09 64.7 79 41.8
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 5.5e-09 64.7 62 53.2
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 7.2e-09 64.3 64 48.4
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 9.5e-09 63.9 70 50.0
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 9.5e-09 63.9 64 50.0
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 9.5e-09 63.9 70 47.1
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 1.6e-08 63.2 69 47.8
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 1.6e-08 63.2 69 47.8
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 2.8e-08 62.4 64 46.9
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 2.8e-08 62.4 64 48.4
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 6.1e-08 61.2 64 48.4
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 6.1e-08 61.2 64 46.9
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 6.1e-08 61.2 64 50.0
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 6.1e-08 61.2 64 48.4
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 6.1e-08 61.2 66 40.9
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 8.0e-08 60.8 71 47.9
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 8.0e-08 60.8 67 46.3
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 8.0e-08 60.8 64 48.4
TPR.G9059 Trifolium pratense HOM05D001004 ORTHO05D000653 8.0e-08 60.8 64 46.9
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.0e-07 60.5 64 46.9
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 1.0e-07 60.5 64 50.0
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 1.0e-07 60.5 64 45.3
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 1.0e-07 60.5 64 45.3
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.4e-07 60.1 77 42.9
Lj5g0009601 Lotus japonicus HOM05D001004 ORTHO05D000653 1.4e-07 60.1 64 46.9
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 1.4e-07 60.1 64 48.4
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 1.4e-07 60.1 71 40.8
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 1.4e-07 60.1 70 47.1
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.8e-07 59.7 64 48.4
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 1.8e-07 59.7 66 42.4
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 1.8e-07 59.7 64 46.9
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 1.8e-07 59.7 64 50.0
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 1.8e-07 59.7 69 44.9
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.3e-07 59.3 64 46.9
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 3.0e-07 58.9 64 50.0
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 3.0e-07 58.9 78 43.6
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 4.0e-07 58.5 86 39.5
Hma1.2p1_0310F.1_g120950 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 4.0e-07 58.5 64 45.3
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 4.0e-07 58.5 64 50.0
CAN.G324.21 Capsicum annuum HOM05D007791 ORTHO05D028502 5.2e-07 58.2 77 42.9
Hma1.2p1_0310F.1_g120940 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 5.2e-07 58.2 64 43.8
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 5.2e-07 58.2 64 48.4
SalBow6G5036 Salvia bowleyana HOM05D001004 ORTHO05D000653 6.8e-07 57.8 64 46.9
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 6.8e-07 57.8 64 48.4
FvH4_4g02840 Fragaria vesca HOM05D001004 ORTHO05D000653 8.9e-07 57.4 60 45.0
FAN12G0040 Fragaria x ananassa HOM05D001004 ORTHO05D000653 8.9e-07 57.4 60 45.0
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 8.9e-07 57.4 68 42.6
RhsimUnG0178600 Rhododendron simsii HOM05D007791 ORTHO05D000653 8.9e-07 57.4 64 54.7
SalBow6G2779 Salvia bowleyana HOM05D001004 ORTHO05D000653 8.9e-07 57.4 64 46.9
PGSC0003DMG400011009 Solanum tuberosum HOM05D007791 ORTHO05D028502 8.9e-07 57.4 69 40.6
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 8.9e-07 57.4 64 46.9
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 8.9e-07 57.4 64 48.4
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 8.9e-07 57.4 64 43.8
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 1.2e-06 57.0 64 46.9
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.2e-06 57.0 68 42.6
MD16G1210400 Malus domestica HOM05D001004 ORTHO05D000653 1.2e-06 57.0 64 45.3
Prupe.1G032900 Prunus persica HOM05D001004 ORTHO05D000653 1.2e-06 57.0 64 43.8
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.2e-06 57.0 65 50.8
SalBow6G3365 Salvia bowleyana HOM05D001004 ORTHO05D000653 1.2e-06 57.0 64 46.9
CiPaw.04G183700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.5e-06 56.6 66 45.5
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.5e-06 56.6 71 43.7
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 1.5e-06 56.6 64 45.3
Psat2g130960 Pisum sativum HOM05D001004 ORTHO05D000653 1.5e-06 56.6 64 43.8
SMO351G0292 Selaginella moellendorffii HOM05D007791 ORTHO05D000653 1.5e-06 56.6 65 49.2
Sopen10g034330 Solanum pennellii HOM05D007791 ORTHO05D028502 1.5e-06 56.6 69 42.0
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 1.5e-06 56.6 64 46.9
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.0e-06 56.2 70 44.3
Medtr5g045470 Medicago truncatula HOM05D001004 ORTHO05D000653 2.0e-06 56.2 64 45.3
Prupe.1G032500 Prunus persica HOM05D001004 ORTHO05D000653 2.0e-06 56.2 71 42.3
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 2.6e-06 55.8 71 43.7
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.6e-06 55.8 68 44.1
Sabra06G0163400 Salix brachista HOM05D001004 ORTHO05D000653 2.6e-06 55.8 64 45.3
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 2.6e-06 55.8 64 48.4
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 3.4e-06 55.5 65 46.2
Migut.A00978 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.4e-06 55.5 64 45.3
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 3.4e-06 55.5 64 43.8
Prupe.I000200 Prunus persica HOM05D001004 ORTHO05D000653 3.4e-06 55.5 64 45.3
MELO3C029118.2 Cucumis melo HOM05D001004 ORTHO05D000653 4.4e-06 55.1 62 40.3
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 4.4e-06 55.1 64 45.3
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 4.4e-06 55.1 64 43.8
Medtr1g075380 Medicago truncatula HOM05D001004 ORTHO05D000653 4.4e-06 55.1 64 45.3
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 4.4e-06 55.1 64 40.6
Potri.006G212000 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.4e-06 55.1 64 45.3
TAR636G3448 Trochodendron aralioides HOM05D001004 ORTHO05D000653 4.4e-06 55.1 64 46.9
Ciclev10006680m.g Citrus clementina HOM05D001004 ORTHO05D000653 5.7e-06 54.7 64 43.8
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 5.7e-06 54.7 64 45.3
CsaV3_7G026940 Cucumis sativus L. HOM05D001004 ORTHO05D000653 5.7e-06 54.7 64 40.6
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 5.7e-06 54.7 64 48.4
Gorai.007G143700 Gossypium raimondii HOM05D001004 ORTHO05D000653 5.7e-06 54.7 64 43.8
Prupe.1G032000 Prunus persica HOM05D001004 ORTHO05D000653 5.7e-06 54.7 64 45.3
Sed0010846 Sechium edule HOM05D001004 ORTHO05D000653 5.7e-06 54.7 65 47.7
Sed0016936 Sechium edule HOM05D001004 ORTHO05D000653 5.7e-06 54.7 61 44.3
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 5.7e-06 54.7 64 46.9
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 5.7e-06 54.7 64 45.3
vmacro08637 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 5.7e-06 54.7 60 46.7
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 7.5e-06 54.3 65 46.2
COL.COLO4_12159 Corchorus olitorius HOM05D001004 ORTHO05D000653 7.5e-06 54.3 64 43.8
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 7.5e-06 54.3 64 43.8
Potri.016G079050 Populus trichocarpa HOM05D001004 ORTHO05D000653 7.5e-06 54.3 64 45.3
QL06p015871 Quercus lobata HOM05D001004 ORTHO05D000653 7.5e-06 54.3 63 44.4
RcHm_v2.0_Chr4g0390951 Rosa chinensis HOM05D001004 ORTHO05D000653 7.5e-06 54.3 64 45.3
SalBow6G5398 Salvia bowleyana HOM05D001004 ORTHO05D000653 7.5e-06 54.3 64 45.3
Sed0020724 Sechium edule HOM05D001004 ORTHO05D000653 7.5e-06 54.3 65 50.8
THA.LOC104824172 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 7.5e-06 54.3 64 45.3
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 7.5e-06 54.3 64 46.9
CiPaw.01G189600 Carya illinoinensis HOM05D001004 ORTHO05D000653 9.8e-06 53.9 64 45.3
Migut.L00816 Erythranthe guttata HOM05D001004 ORTHO05D000653 9.8e-06 53.9 61 42.6
FAN17G1119 Fragaria x ananassa HOM05D001004 ORTHO05D000653 9.8e-06 53.9 58 46.6
Lj5g0018869 Lotus japonicus HOM05D001004 ORTHO05D000653 9.8e-06 53.9 64 45.3
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 9.8e-06 53.9 64 45.3
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 9.8e-06 53.9 64 42.2
Sabra16G0086000 Salix brachista HOM05D001004 ORTHO05D000653 9.8e-06 53.9 64 43.8


User provided reference genes

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