Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G150600 Glycine max HOM05D004145 ORTHO05D004879 3.4e-71 271.6 138 100.0
Glyma.03G243100 Glycine max HOM05D004145 ORTHO05D004879 2.2e-49 199.1 109 92.7
VMungo0540G0740 Vigna mungo HOM05D004145 ORTHO05D004879 5.4e-40 167.9 110 80.9
Phvul.006G097200 Phaseolus vulgaris HOM05D004145 ORTHO05D004879 2.7e-39 165.6 111 78.4
Lalb_Chr15g0076981 Lupinus albus HOM05D004145 ORTHO05D004879 5.4e-32 141.4 110 70.9
TPR.G33341 Trifolium pratense HOM05D004145 ORTHO05D004879 1.2e-31 140.2 106 69.8
CiPaw.13G133200 Carya illinoinensis HOM05D004145 ORTHO05D004879 3.5e-31 138.7 112 66.1
QL03p001164 Quercus lobata HOM05D004145 ORTHO05D004879 1.3e-30 136.7 112 65.2
MD00G1051200 Malus domestica HOM05D004145 ORTHO05D004879 8.6e-30 134.0 108 67.6
MD17G1228000 Malus domestica HOM05D004145 ORTHO05D004879 8.6e-30 134.0 108 67.6
Dinv09830 Davidia involucrata HOM05D004145 ORTHO05D004879 1.1e-29 133.7 104 69.2
Medtr7g115610 Medicago truncatula HOM05D004145 ORTHO05D004879 4.2e-29 131.7 111 65.8
Dinv04277 Davidia involucrata HOM05D004145 ORTHO05D004879 5.5e-29 131.3 106 67.0
Sed0004488 Sechium edule HOM05D004145 ORTHO05D004879 9.5e-29 130.6 110 60.0
Actinidia30923 Actinidia chinensis HOM05D004145 ORTHO05D004879 4.0e-27 125.2 114 59.6
Prupe.6G335900 Prunus persica HOM05D004145 ORTHO05D004879 6.8e-27 124.4 105 64.8
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 1.2e-26 123.6 113 59.3
Oeu028497.4 Olea europaea HOM05D004145 ORTHO05D004879 1.5e-26 123.2 109 58.7
MD12G1232500 Malus domestica HOM05D004145 ORTHO05D004879 2.6e-26 122.5 108 63.9
Lj5g0001865 Lotus japonicus HOM05D004145 ORTHO05D004879 4.4e-26 121.7 111 60.4
Psat0s1551g0320 Pisum sativum HOM05D004145 ORTHO05D004879 4.4e-26 121.7 111 61.3
CSS0025723 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 7.5e-26 120.9 112 58.0
CSS0045127 Camellia sinensis var. sinensis HOM05D004145 ORTHO05D004879 7.5e-26 120.9 112 58.0
Potri.005G045200 Populus trichocarpa HOM05D004145 ORTHO05D004879 7.5e-26 120.9 110 61.8
Ca_12868_v3 Cicer arietinum L. HOM05D004145 ORTHO05D004879 9.8e-26 120.6 111 61.3
MELO3C004345.2 Cucumis melo HOM05D004145 ORTHO05D004879 9.8e-26 120.6 102 59.8
Atru.chr2.638 Acer truncatum HOM05D004145 ORTHO05D004879 1.7e-25 119.8 111 57.7
CsaV3_2G004470 Cucumis sativus L. HOM05D004145 ORTHO05D004879 4.9e-25 118.2 102 58.8
Migut.H01121 Erythranthe guttata HOM05D004145 ORTHO05D004879 8.3e-25 117.5 109 60.6
vmacro06192 Vaccinium macrocarpon HOM05D004145 ORTHO05D004879 1.8e-24 116.3 105 59.0
Nn2g12613 Nelumbo nucifera HOM05D004145 ORTHO05D004879 2.4e-24 115.9 108 56.5
arahy.Tifrunner.gnm1.ann1.N9EJ2X Arachis hypogaea HOM05D004145 ORTHO05D004879 4.1e-24 115.2 110 62.7
arahy.Tifrunner.gnm1.ann1.Q65QWU Arachis hypogaea HOM05D004145 ORTHO05D004879 4.1e-24 115.2 110 62.7
Ciclev10019027m.g Citrus clementina HOM05D004145 ORTHO05D004879 4.1e-24 115.2 106 59.4
Psat3g029840 Pisum sativum HOM05D004145 ORTHO05D004879 7.8e-23 110.9 105 61.0
FAN24G1676 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.0e-22 110.5 104 63.5
FAN27G3237 Fragaria x ananassa HOM05D004145 ORTHO05D004879 1.0e-22 110.5 104 63.5
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 1.0e-22 110.5 103 58.3
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 1.0e-22 110.5 103 58.3
MSTRG.2685 Avicennia marina HOM05D004145 ORTHO05D004879 1.3e-22 110.2 102 59.8
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 1.3e-22 110.2 104 63.5
CANSAT54G2505 Cannabis sativa HOM05D004145 ORTHO05D004879 1.7e-22 109.8 112 55.4
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 2.9e-22 109.0 101 58.4
Cpa.g.sc117.31 Carica papaya HOM05D004145 ORTHO05D004879 2.9e-22 109.0 123 54.5
FAN15G1727 Fragaria x ananassa HOM05D004145 ORTHO05D004879 2.9e-22 109.0 104 62.5
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 2.9e-22 109.0 107 56.1
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 3.9e-22 108.6 104 62.5
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 3.9e-22 108.6 137 51.1
CARHR129130 Cardamine hirsuta HOM05D004145 ORTHO05D004879 5.0e-22 108.2 104 55.8
TAR365G0486 Trochodendron aralioides HOM05D004145 ORTHO05D004879 5.0e-22 108.2 104 54.8
Thecc.05G254300 Theobroma cacao HOM05D004145 ORTHO05D004879 8.6e-22 107.5 100 57.0
Sabra19G0021200 Salix brachista HOM05D004145 ORTHO05D004879 2.5e-21 105.9 137 50.4
Sc16g0010400 Simmondsia chinensis HOM05D004145 ORTHO05D004879 2.5e-21 105.9 123 52.0
Hma1.2p1_1636F.1_g294830 Hydrangea macrophylla HOM05D004145 ORTHO05D004879 3.3e-21 105.5 113 52.2
SGA_v2.0_scaffold80G25752 Striga asiatica HOM05D004145 ORTHO05D004879 3.3e-21 105.5 109 54.1
Manes.09G159400 Manihot esculenta HOM05D004145 ORTHO05D004879 5.6e-21 104.8 108 53.7
Eucgr.H04421 Eucalyptus grandis HOM05D004145 ORTHO05D004879 7.3e-21 104.4 111 55.0
Eucgr.L03047 Eucalyptus grandis HOM05D004145 ORTHO05D004879 1.2e-20 103.6 105 57.1
Hund07348 Selenicereus undatus HOM05D004145 ORTHO05D004879 1.6e-20 103.2 105 56.2
Aqoxy2G04020 Aquilegia oxysepala HOM05D004145 ORTHO05D004879 4.7e-20 101.7 98 58.2
DCAR_006415 Daucus carota HOM05D004145 ORTHO05D004879 1.0e-19 100.5 96 54.2
Gohir.D13G104600 Gossypium hirsutum HOM05D004145 ORTHO05D004879 1.0e-19 100.5 99 53.5
Gorai.013G117100 Gossypium raimondii HOM05D004145 ORTHO05D004879 1.4e-19 100.1 99 53.5
Carub.0004s1666 Capsella rubella HOM05D004145 ORTHO05D004879 1.8e-19 99.8 103 54.4
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 3.1e-19 99.0 105 56.2
THA.LOC104805832 Tarenaya hassleriana HOM05D004145 ORTHO05D004879 3.1e-19 99.0 100 57.0
Nitab4.5_0000245g0100 Nicotiana tabacum HOM05D004145 ORTHO05D004879 4.0e-19 98.6 99 55.6
BcaB02g09494 Brassica carinata HOM05D004145 ORTHO05D004879 5.2e-19 98.2 103 55.3
BcaB06g28815 Brassica carinata HOM05D004145 ORTHO05D004879 6.8e-19 97.8 105 53.3
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 6.8e-19 97.8 99 55.6
BcaB02g09493 Brassica carinata HOM05D004145 ORTHO05D004879 8.9e-19 97.4 103 55.3
Gohir.A13G101100 Gossypium hirsutum HOM05D004145 ORTHO05D004879 1.2e-18 97.1 99 52.5
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 1.2e-18 97.1 135 45.9
AL4G30980 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.5e-18 96.7 103 52.4
Thhalv10016297m.g Eutrema salsugineum HOM05D004145 ORTHO05D004879 1.5e-18 96.7 108 52.8
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 2.0e-18 96.3 123 47.2
AT2G34970 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 3.4e-18 95.5 103 51.5
Sp4g17260 Schrenkiella parvula HOM05D004145 ORTHO05D004879 3.4e-18 95.5 103 53.4
Cc02_g32210 Coffea canephora HOM05D004145 ORTHO05D004879 4.4e-18 95.1 110 50.0
Aa31sc654G10 Aethionema arabicum HOM05D004145 ORTHO05D004879 5.8e-18 94.7 110 49.1
A05p10730 Brassica napus HOM05D004145 ORTHO05D004879 7.5e-18 94.4 96 58.3
BolC4t22972H Brassica oleracea HOM05D004145 ORTHO05D004879 7.5e-18 94.4 96 58.3
RcHm_v2.0_Chr4g0430791 Rosa chinensis HOM05D004145 ORTHO05D004879 7.5e-18 94.4 101 52.5
C04p13820 Brassica napus HOM05D004145 ORTHO05D004879 9.8e-18 94.0 96 58.3
BraA05t20017Z Brassica rapa HOM05D004145 ORTHO05D004879 1.7e-17 93.2 96 57.3
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 4.9e-17 91.7 105 52.4
EL10Ac4g09963 Beta vulgaris HOM05D004145 ORTHO05D004879 6.4e-17 91.3 86 58.1
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 2.4e-16 89.4 112 49.1
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 3.2e-16 89.0 111 50.5
PSO017G5505 Papaver somniferum HOM05D004145 ORTHO05D004879 5.4e-16 88.2 87 50.6
FvH4_4g24260 Fragaria vesca HOM05D004145 ORTHO05D004879 9.2e-16 87.4 121 44.6
HanXRQChr15g0469811 Helianthus annuus HOM05D004145 ORTHO05D004879 2.0e-15 86.3 112 46.4
PSO675G1731 Papaver somniferum HOM05D004145 ORTHO05D004879 2.0e-15 86.3 87 49.4
TWI56G0710 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 3.5e-15 85.5 111 48.6
Carub.0007s2297 Capsella rubella HOM05D004145 ORTHO05D004879 4.6e-15 85.1 101 44.6
ClCG07G016490 Citrullus lanatus HOM05D004145 ORTHO05D004879 7.8e-15 84.3 62 59.7
CDE05G0178 Ceratophyllum demersum HOM05D004145 ORTHO05D004879 1.3e-14 83.6 102 45.1
unitig_748.g8566 Utricularia gibba HOM05D004145 ORTHO05D004879 1.7e-14 83.2 107 43.0
COL.COLO4_36032 Corchorus olitorius HOM05D004145 ORTHO05D004879 6.6e-14 81.3 104 45.2
FAN07G1263 Fragaria x ananassa HOM05D000016 ORTHO05D004879 6.6e-14 81.3 107 44.9
AUR62000308 Chenopodium quinoa HOM05D004145 ORTHO05D004879 8.6e-14 80.9 68 60.3
AUR62006653 Chenopodium quinoa HOM05D004145 ORTHO05D004879 8.6e-14 80.9 68 60.3
FvH4_4g24061 Fragaria vesca HOM05D004145 ORTHO05D004879 8.6e-14 80.9 107 45.8
AT3G02270 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 1.1e-13 80.5 103 45.6
AL7G36090 Arabidopsis lyrata HOM05D004145 ORTHO05D004879 1.9e-13 79.7 100 45.0
Rhsim03G0245100 Rhododendron simsii HOM05D004145 ORTHO05D004879 4.3e-13 78.6 79 51.9
Haze_04291 Corylus avellana HOM05D004145 ORTHO05D004879 1.6e-12 76.6 86 55.8
HPP92_016926 Vanilla planifolia HOM05D004145 ORTHO05D004879 6.2e-12 74.7 90 51.1
FAN17G0778 Fragaria x ananassa HOM05D004145 ORTHO05D004879 8.1e-12 74.3 72 50.0
Ah.06g195470 Amaranthus hybridus HOM05D004145 ORTHO05D004879 1.8e-11 73.2 56 60.7
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 3.1e-11 72.4 76 48.7
ECA246G2136 Erigeron canadensis HOM05D004145 ORTHO05D004879 4.0e-11 72.0 107 41.1
AT4G18300 Arabidopsis thaliana HOM05D004145 ORTHO05D004879 2.6e-10 69.3 99 46.5
ATR0564G152 Amborella trichopoda HOM05D004145 ORTHO05D004879 7.5e-10 67.8 92 40.2
Pp3c1_20030 Physcomitrium patens HOM05D004145 ORTHO05D004879 1.3e-09 67.0 142 33.8
SEGI_03238 Sequoiadendron giganteum HOM05D004145 ORTHO05D004879 1.3e-09 67.0 107 41.1
PSO339G4752 Papaver somniferum HOM05D004145 ORTHO05D004879 3.7e-09 65.5 74 43.2
Os02g0812400 Oryza sativa ssp. japonica HOM05D004145 ORTHO05D004879 1.4e-08 63.5 100 42.0
PSO675G6749 Papaver somniferum HOM05D004145 ORTHO05D004879 2.4e-08 62.8 90 42.2
PSO541G4045 Papaver somniferum HOM05D004145 ORTHO05D004879 4.1e-08 62.0 90 41.1
Zm00001eb258570 Zea mays HOM05D004145 ORTHO05D004879 5.4e-08 61.6 112 40.2
Mapoly0056s0115 Marchantia polymorpha HOM05D004145 ORTHO05D004879 4.6e-07 58.5 104 35.6
AagrBONN_evm.TU.Sc2ySwM_228.295 Anthoceros agrestis HOM05D004145 ORTHO05D004879 1.0e-06 57.4 53 41.5
Haze_14654 Corylus avellana HOM05D004145 ORTHO05D004879 1.3e-06 57.0 76 50.0
Medtr6g023790 Medicago truncatula HOM05D004145 ORTHO05D004879 1.7e-06 56.6 34 73.5


User provided reference genes

Program Settings