Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 4.2e-37 157.5 80 100.0
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 7.9e-36 153.3 79 96.2
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 1.9e-34 148.7 80 92.5
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 3.1e-32 141.4 82 89.0
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 6.9e-32 140.2 82 87.8
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 9.0e-32 139.8 82 89.0
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 7.7e-31 136.7 82 85.4
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 1.7e-30 135.6 82 84.1
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 9.4e-29 129.8 82 81.7
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 5.1e-27 124.0 91 72.5
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 5.1e-27 124.0 86 70.9
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 1.3e-25 119.4 85 70.6
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 2.2e-25 118.6 86 68.6
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 3.7e-25 117.9 80 72.5
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 3.7e-25 117.9 77 81.8
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 3.7e-25 117.9 86 69.8
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 3.7e-25 117.9 86 69.8
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 4.8e-25 117.5 80 72.5
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 6.3e-25 117.1 80 71.2
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 8.2e-25 116.7 86 67.4
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.1e-24 116.3 86 69.8
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 1.1e-24 116.3 82 69.5
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 1.4e-24 115.9 86 67.4
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 1.8e-24 115.5 84 69.0
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 2.4e-24 115.2 86 69.8
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 4.1e-24 114.4 86 67.4
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 4.1e-24 114.4 86 70.9
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 6.9e-24 113.6 80 71.2
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 9.1e-24 113.2 86 65.1
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 1.5e-23 112.5 86 67.4
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.5e-23 112.5 86 68.6
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 2.0e-23 112.1 83 67.5
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 2.6e-23 111.7 86 67.4
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 2.6e-23 111.7 86 67.4
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 3.4e-23 111.3 84 65.5
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 3.4e-23 111.3 86 68.6
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 4.5e-23 110.9 87 65.5
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 4.5e-23 110.9 87 65.5
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 4.5e-23 110.9 87 65.5
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 4.5e-23 110.9 87 65.5
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 4.5e-23 110.9 87 65.5
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 5.9e-23 110.5 80 71.2
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 7.7e-23 110.2 86 67.4
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 1.7e-22 109.0 82 69.5
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 2.9e-22 108.2 86 65.1
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 2.9e-22 108.2 80 65.0
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 8.5e-22 106.7 88 61.4
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 1.1e-21 106.3 86 64.0
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 1.1e-21 106.3 86 60.5
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 1.9e-21 105.5 87 63.2
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 2.5e-21 105.1 80 66.2
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 2.5e-21 105.1 80 65.0
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 9.4e-21 103.2 86 66.3
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 1.6e-20 102.4 86 59.3
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 1.6e-20 102.4 86 64.0
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 2.1e-20 102.1 86 64.0
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 2.7e-20 101.7 86 65.1
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 2.7e-20 101.7 85 65.9
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 2.7e-20 101.7 82 64.6
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 4.7e-20 100.9 86 64.0
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 6.1e-20 100.5 86 61.6
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 6.1e-20 100.5 87 63.2
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 1.0e-19 99.8 86 62.8
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 1.0e-19 99.8 86 62.8
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 1.0e-19 99.8 85 58.8
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 1.0e-19 99.8 86 59.3
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 1.0e-19 99.8 86 59.3
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 1.4e-19 99.4 86 62.8
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 1.4e-19 99.4 86 62.8
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 1.4e-19 99.4 78 65.4
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 1.8e-19 99.0 83 61.4
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 1.8e-19 99.0 79 64.6
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 2.3e-19 98.6 86 61.6
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 2.3e-19 98.6 82 64.6
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 2.3e-19 98.6 86 61.6
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 2.3e-19 98.6 87 56.3
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 2.3e-19 98.6 86 62.8
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 3.0e-19 98.2 83 67.5
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 3.9e-19 97.8 86 62.8
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 5.1e-19 97.4 87 60.9
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 5.1e-19 97.4 87 55.2
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 6.7e-19 97.1 85 55.3
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 1.1e-18 96.3 86 61.6
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 1.5e-18 95.9 84 60.7
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 2.0e-18 95.5 86 61.6
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 5.7e-18 94.0 79 58.2
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 5.7e-18 94.0 82 62.2
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 5.7e-18 94.0 83 61.4
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 7.4e-18 93.6 87 60.9
ECA248G3376 Erigeron canadensis HOM05D006634 ORTHO05D008282 9.7e-18 93.2 83 59.0
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 4.8e-17 90.9 80 60.0
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 8.2e-17 90.1 85 55.3
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 1.8e-16 89.0 86 54.7
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 4.1e-16 87.8 82 56.1
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 5.3e-16 87.4 75 62.7
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 4.5e-15 84.3 74 59.5
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 7.7e-15 83.6 82 53.7
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 1.0e-14 83.2 84 57.1
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 1.7e-14 82.4 174 33.3
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 2.5e-13 78.6 84 54.8
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 9.4e-13 76.6 89 49.4
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 1.2e-12 76.3 80 50.0
Cc01_g11130 Coffea canephora HOM05D006634 ORTHO05D008282 8.0e-12 73.6 66 53.0
SalBow3G3864 Salvia bowleyana HOM05D006634 ORTHO05D008282 3.0e-11 71.6 84 47.6
Mapoly0137s0028 Marchantia polymorpha HOM05D006634 ORTHO05D008282 7.5e-10 67.0 92 40.2
Pp3c7_7440 Physcomitrium patens HOM05D006634 ORTHO05D008282 8.2e-09 63.5 92 40.2
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 3.1e-08 61.6 41 80.5
Haze_23828 Corylus avellana HOM05D006634 ORTHO05D008282 3.1e-08 61.6 48 68.8
MBI10_g13399_MAGBIO Magnolia biondii HOM05D006634 ORTHO05D008282 2.0e-07 58.9 43 67.4
Ah.01g002900 Amaranthus hybridus HOM05D006634 ORTHO05D008282 5.9e-07 57.4 71 46.5
A04p21560 Brassica napus HOM05D006634 ORTHO05D008282 5.9e-07 57.4 42 61.9
Haze_23826 Corylus avellana HOM05D025838 ORTHO05D008282 5.9e-07 57.4 31 77.4
PGSC0003DMG400008051 Solanum tuberosum HOM05D006634 ORTHO05D008282 1.3e-06 56.2 41 70.7


User provided reference genes

Program Settings