Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 3.8e-70 268.1 138 100.0
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.5e-63 246.1 138 92.0
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.3e-57 226.5 138 84.1
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 2.1e-52 209.1 138 78.3
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.2e-47 193.4 140 75.0
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 6.5e-46 187.6 138 73.9
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.8e-43 179.5 138 69.6
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.2e-41 172.6 140 62.9
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 2.8e-41 172.2 138 62.3
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 3.7e-41 171.8 129 66.7
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 4.8e-41 171.4 138 65.9
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.1e-40 168.3 142 67.6
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.0e-38 163.7 138 60.9
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.3e-38 163.3 139 63.3
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 5.0e-38 161.4 138 60.9
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 6.5e-38 161.0 129 63.6
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 2.1e-36 156.0 130 60.8
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 3.0e-35 152.1 138 58.7
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 3.0e-35 152.1 139 54.0
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.8e-35 151.0 139 58.3
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 8.8e-35 150.6 131 55.0
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.0e-34 149.4 140 57.1
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 9.8e-34 147.1 140 57.9
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.3e-33 146.7 140 57.9
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.3e-33 146.7 128 60.2
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.3e-33 146.7 134 59.0
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.7e-33 146.4 140 57.9
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.7e-33 145.2 140 57.1
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 6.3e-33 144.4 135 57.8
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 8.3e-33 144.1 134 57.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.4e-32 143.3 130 55.4
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 2.4e-32 142.5 123 56.1
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.4e-32 142.5 130 54.6
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 4.1e-32 141.7 130 54.6
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.1e-32 141.7 130 54.6
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.0e-32 141.0 130 54.6
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 7.0e-32 141.0 139 54.7
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.0e-31 139.4 127 57.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.7e-31 139.0 139 56.8
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.5e-31 138.7 130 53.8
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 7.7e-31 137.5 143 55.9
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 7.7e-31 137.5 143 52.4
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.9e-30 135.6 128 57.0
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 6.6e-30 134.4 130 53.1
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.5e-29 132.5 143 51.0
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 2.5e-29 132.5 131 51.9
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 4.2e-29 131.7 127 55.1
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 4.2e-29 131.7 125 54.4
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 5.5e-29 131.3 130 53.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.5e-29 131.3 135 52.6
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.5e-29 130.6 140 50.0
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 9.5e-29 130.6 129 51.9
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.6e-28 129.8 140 50.0
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.6e-28 129.8 134 50.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 2.1e-28 129.4 135 54.8
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.6e-28 128.6 132 53.8
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.6e-28 128.6 140 48.6
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.3e-27 125.9 128 55.5
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 2.3e-27 125.9 139 53.2
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.0e-27 125.2 132 49.2
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 4.0e-27 125.2 133 48.1
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 5.2e-27 124.8 112 59.8
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 5.7e-26 121.3 113 52.2
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.8e-26 120.6 139 53.2
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.3e-25 117.5 139 51.8
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.8e-24 116.3 133 48.9
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.6e-23 113.2 133 51.9
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.0e-23 112.8 135 42.2
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.7e-23 112.5 142 49.3
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 3.5e-23 112.1 130 48.5
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 4.6e-23 111.7 124 52.4
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 4.6e-23 111.7 113 55.8
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 4.6e-23 111.7 126 46.0
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 7.8e-23 110.9 120 45.8
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.9e-22 109.0 129 45.7
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.1e-21 107.1 145 42.8
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.5e-21 106.7 128 42.2
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.9e-21 106.3 115 50.4
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 4.3e-21 105.1 123 46.3
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 7.3e-21 104.4 149 42.3
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.2e-20 103.6 144 42.4
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.1e-20 102.8 134 45.5
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.8e-20 102.4 135 45.9
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.6e-20 102.1 102 48.0
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.7e-20 101.7 137 47.4
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 8.0e-20 100.9 106 48.1
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 2.3e-19 99.4 86 66.3
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.0e-18 96.3 131 43.5
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.8e-18 94.7 133 44.4
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 9.8e-18 94.0 125 44.0
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.7e-17 93.2 123 46.3
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 3.7e-17 92.0 132 40.9
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 4.9e-17 91.7 126 44.4
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 8.3e-17 90.9 106 48.1
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 8.3e-17 90.9 106 48.1
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.1e-16 90.5 130 42.3
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.1e-16 88.6 117 44.4
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 4.1e-16 88.6 146 39.0
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.4e-16 88.2 106 52.8
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 7.0e-16 87.8 132 38.6
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 9.2e-16 87.4 132 38.6
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 2.0e-15 86.3 129 36.4
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.0e-15 86.3 117 43.6
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.0e-15 86.3 110 43.6
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.7e-15 85.9 112 44.6
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 3.5e-15 85.5 119 45.4
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 4.6e-15 85.1 108 46.3
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.3e-14 83.6 108 47.2
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 3.0e-14 82.4 106 46.2
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 6.6e-14 81.3 108 46.3
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 8.6e-14 80.9 111 44.1
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.5e-13 80.1 111 43.2
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.9e-13 79.7 106 44.3
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 2.5e-13 79.3 108 43.5
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 2.5e-13 79.3 108 43.5
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 2.5e-13 79.3 129 38.8
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 3.3e-13 79.0 108 42.6
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 3.3e-13 79.0 108 42.6
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 3.3e-13 79.0 108 42.6
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 7.3e-13 77.8 103 43.7
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.2e-12 77.0 110 46.4
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.1e-12 76.3 118 39.8
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 8.1e-12 74.3 134 41.0
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.3e-09 67.0 125 40.8
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 4.9e-09 65.1 123 33.3
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.4e-08 63.5 132 34.8
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.9e-08 63.2 139 33.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.9e-08 63.2 139 33.8
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 3.5e-07 58.9 108 39.8
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 4.6e-07 58.5 143 33.6
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 1.3e-06 57.0 114 30.7
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 1.3e-06 57.0 131 31.3
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.7e-06 56.6 132 33.3
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 3.9e-06 55.5 141 29.8
Zm00001eb045580 Zea mays HOM05D037252 ORTHO05D049526 3.9e-06 55.5 145 30.3
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 6.6e-06 54.7 131 29.0


User provided reference genes

Program Settings