Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1199.9 664 100.0
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1109.4 667 89.7
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1084.3 667 86.2
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.3e-309 1065.8 667 85.2
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 7.4e-289 996.9 666 79.9
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 1.8e-287 992.3 668 80.1
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 3.1e-287 991.5 669 78.9
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 5.0e-285 984.2 670 78.2
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 2.5e-284 981.9 666 78.8
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-273 946.0 658 81.8
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 3.3e-268 928.3 669 75.5
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 1.4e-247 859.8 668 68.9
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 1.9e-244 849.4 704 66.8
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 1.1e-242 843.6 667 67.8
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 1.1e-242 843.6 666 68.2
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 8.9e-242 840.5 666 67.1
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 1.5e-241 839.7 669 68.0
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 2.0e-241 839.3 667 66.7
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 5.8e-241 837.8 668 68.3
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 2.2e-240 835.9 623 78.7
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 2.9e-240 835.5 667 67.3
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 7.1e-239 830.9 668 67.4
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 3.5e-238 828.6 668 67.4
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 5.1e-237 824.7 666 66.7
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 8.6e-237 823.9 666 66.2
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 1.1e-236 823.5 662 65.6
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 4.3e-236 821.6 668 66.8
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 4.3e-236 821.6 666 66.2
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.6e-235 818.5 668 66.9
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.3e-232 810.1 668 66.0
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 6.4e-232 807.7 675 65.5
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 5.4e-231 804.7 667 64.5
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.2e-230 803.5 667 66.1
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.5e-230 802.0 671 65.1
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 4.6e-230 801.6 664 65.2
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 6.0e-230 801.2 635 68.2
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 3.9e-229 798.5 663 65.8
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.5e-228 796.6 666 64.4
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 9.6e-228 793.9 668 63.6
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 2.8e-227 792.3 663 64.6
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 2.8e-227 792.3 664 64.6
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 8.1e-227 790.8 633 67.3
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 1.4e-226 790.0 665 64.7
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 5.3e-226 788.1 663 64.6
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 4.9e-224 781.6 664 63.0
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 5.4e-223 778.1 663 62.9
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.9e-222 774.2 668 64.1
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 2.5e-220 769.2 665 62.7
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.5e-220 769.2 666 62.9
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 5.6e-220 768.1 666 63.1
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 7.3e-220 767.7 666 62.9
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.8e-219 765.8 677 61.6
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 2.4e-218 762.7 667 62.1
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 2.4e-218 762.7 692 61.1
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 2.4e-218 762.7 736 59.1
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 7.6e-217 757.7 664 61.4
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 2.9e-216 755.7 661 63.7
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 4.2e-215 751.9 603 66.8
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 9.3e-215 750.7 674 60.8
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 5.6e-212 741.5 675 59.7
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 2.1e-211 739.6 689 59.8
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.1e-210 737.3 662 60.1
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.4e-210 736.9 662 63.3
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 1.4e-210 736.9 679 62.9
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 9.0e-210 734.2 665 60.0
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.2e-209 733.8 666 64.4
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 1.5e-209 733.4 661 65.2
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 2.6e-209 732.6 664 60.7
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 4.5e-209 731.9 661 60.1
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 7.6e-209 731.1 665 59.7
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 1.3e-208 730.3 695 58.8
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 1.3e-208 730.3 665 61.1
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 2.9e-208 729.2 665 60.0
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 5.5e-207 724.9 668 60.0
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 5.5e-207 724.9 675 62.2
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.6e-206 723.4 662 59.5
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 3.5e-206 722.2 662 59.2
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 6.0e-206 721.5 662 59.4
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 7.9e-206 721.1 662 58.9
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.0e-205 719.2 662 58.9
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 3.9e-205 718.8 663 59.3
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 5.1e-205 718.4 662 59.2
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 1.1e-204 717.2 664 64.0
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 5.8e-201 704.9 667 63.3
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 1.3e-200 703.7 678 57.8
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 5.5e-199 698.4 668 63.2
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 3.3e-196 689.1 705 55.5
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.3e-192 677.2 675 57.5
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.9e-191 673.3 766 52.2
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.1e-190 668.3 594 61.6
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 7.9e-182 641.3 665 53.2
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 7.0e-178 628.2 669 51.7
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.2e-169 600.9 662 53.6
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 2.5e-159 566.6 712 46.5
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 4.0e-157 559.3 670 52.8
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.3e-152 543.5 528 56.1
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 3.8e-152 542.7 666 47.7
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.3e-144 517.7 539 54.9
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.3e-125 453.8 489 52.4
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.2e-124 451.4 397 64.5
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 4.0e-117 426.4 607 43.0
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 3.9e-112 409.8 681 42.3
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 4.0e-109 399.8 634 41.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 1.9e-98 364.4 583 38.4
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 3.2e-98 363.6 702 35.2
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 5.5e-98 362.8 625 38.6
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.1e-87 328.6 221 73.8
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.9e-87 327.8 311 59.5
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.2e-76 292.0 222 65.3
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 5.1e-72 276.6 242 66.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 8.2e-70 269.2 171 76.0
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.1e-63 248.8 220 65.9
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.5e-63 248.4 273 51.6
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.4e-61 241.9 173 67.1
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 6.1e-49 199.9 352 38.1
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.5e-42 177.9 163 57.7
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 9.8e-39 166.0 207 48.3
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.7e-38 165.2 121 67.8
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 5.9e-36 156.8 118 69.5
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.7e-35 155.2 93 81.7
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 5.6e-34 150.2 125 64.8
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 4.9e-30 137.1 117 68.4
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 9.2e-29 132.9 105 68.6
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 2.3e-27 128.3 86 79.1
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 8.6e-27 126.3 656 27.0
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 7.3e-26 123.2 222 38.3
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.2e-23 115.9 134 53.0
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 2.0e-23 115.2 71 73.2
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 2.0e-23 115.2 71 73.2
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.0e-23 115.2 593 22.6
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.5e-18 98.2 123 44.7
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 9.5e-18 96.3 68 76.5
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.7e-11 75.5 68 61.8
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.4e-08 65.1 47 72.3
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 8.4e-06 56.6 184 27.7


User provided reference genes

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