Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 3.3e-68 261.5 128 100.0
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.8e-67 258.5 128 97.7
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 5.8e-65 250.8 128 97.7
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 8.4e-64 246.9 128 95.3
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.8e-61 239.2 128 89.1
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 3.9e-61 238.0 128 88.3
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 2.5e-60 235.3 128 87.5
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.4e-58 228.8 128 84.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 9.0e-58 226.9 128 87.5
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 2.6e-57 225.3 128 85.2
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 4.5e-57 224.6 132 81.8
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 5.8e-57 224.2 129 81.4
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 1.0e-56 223.4 133 82.0
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.7e-56 222.6 131 82.4
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.2e-56 222.2 128 81.2
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 2.9e-56 221.9 131 82.4
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 3.8e-56 221.5 134 80.6
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 4.9e-56 221.1 128 82.0
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 6.5e-56 220.7 128 82.0
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 6.5e-56 220.7 130 83.1
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.9e-55 219.2 132 81.1
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 2.5e-55 218.8 130 81.5
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.5e-55 218.8 130 82.3
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.2e-55 218.4 129 81.4
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 4.2e-55 218.0 131 80.2
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 4.2e-55 218.0 131 80.2
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 4.2e-55 218.0 131 80.2
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 4.2e-55 218.0 130 80.8
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 7.1e-55 217.2 130 81.5
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 7.1e-55 217.2 128 81.2
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.3e-55 216.9 130 80.8
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.3e-55 216.9 130 80.8
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 9.3e-55 216.9 129 79.1
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.2e-54 216.5 128 82.0
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.2e-54 216.5 131 80.9
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.2e-54 216.5 128 79.7
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.6e-54 216.1 128 79.7
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 1.6e-54 216.1 128 82.0
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.6e-54 216.1 132 81.1
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.6e-54 216.1 128 82.8
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.6e-54 216.1 128 78.9
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 2.1e-54 215.7 115 87.8
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.1e-54 215.7 130 80.0
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 2.1e-54 215.7 130 80.8
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 6.0e-54 214.2 132 79.5
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 7.9e-54 213.8 129 79.8
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 7.9e-54 213.8 134 76.9
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.8e-53 212.6 130 79.2
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.8e-53 212.6 130 80.0
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 1.8e-53 212.6 128 78.9
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 2.3e-53 212.2 129 80.6
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.3e-53 212.2 130 80.0
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.0e-53 211.8 130 80.0
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 3.0e-53 211.8 131 78.6
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.0e-53 211.8 130 79.2
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 3.0e-53 211.8 134 79.1
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 3.9e-53 211.5 128 76.6
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 6.7e-53 210.7 128 76.6
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 6.7e-53 210.7 128 81.2
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 6.7e-53 210.7 132 77.3
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 6.7e-53 210.7 127 81.9
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.7e-53 210.3 131 77.9
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 8.7e-53 210.3 133 78.2
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 8.7e-53 210.3 133 76.7
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 1.1e-52 209.9 129 78.3
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.5e-52 209.5 131 78.6
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 1.5e-52 209.5 131 75.6
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.5e-52 209.5 129 79.1
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.5e-52 209.5 133 76.7
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.9e-52 209.1 129 79.1
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.9e-52 209.1 130 78.5
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.9e-52 209.1 129 78.3
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 4.3e-52 208.0 133 74.4
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 4.3e-52 208.0 128 76.6
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 4.3e-52 208.0 134 76.1
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 4.3e-52 208.0 130 78.5
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 4.3e-52 208.0 130 78.5
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.7e-52 207.6 130 79.2
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 7.4e-52 207.2 133 75.2
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 7.4e-52 207.2 130 79.2
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 7.4e-52 207.2 130 79.2
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 7.4e-52 207.2 130 78.5
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 9.6e-52 206.8 129 76.0
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 9.6e-52 206.8 130 77.7
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.6e-51 206.1 132 76.5
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.6e-51 206.1 128 77.3
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 2.1e-51 205.7 128 75.8
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.1e-51 205.7 132 75.0
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.8e-51 205.3 133 73.7
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 2.8e-51 205.3 130 76.9
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 2.8e-51 205.3 130 76.9
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 2.8e-51 205.3 131 74.8
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 3.7e-51 204.9 128 78.1
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 3.7e-51 204.9 130 76.9
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 4.8e-51 204.5 133 72.9
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 6.2e-51 204.1 128 75.0
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 6.2e-51 204.1 133 76.7
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 8.2e-51 203.8 133 73.7
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 8.2e-51 203.8 129 74.4
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 8.2e-51 203.8 129 73.6
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 72.9
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 1.8e-50 202.6 134 72.4
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.1e-50 201.8 133 72.9
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.1e-50 201.8 128 75.0
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 4.1e-50 201.4 125 78.4
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 5.3e-50 201.1 128 73.4
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 5.3e-50 201.1 133 71.4
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 5.3e-50 201.1 133 71.4
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 5.3e-50 201.1 130 76.2
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 5.3e-50 201.1 133 72.2
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 6.9e-50 200.7 128 73.4
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 6.9e-50 200.7 133 72.2
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 6.9e-50 200.7 133 71.4
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 9.0e-50 200.3 120 78.3
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-49 199.9 120 79.2
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.5e-49 199.5 129 76.7
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.5e-49 199.5 127 74.8
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.5e-49 199.5 129 76.0
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.0e-49 199.1 134 71.6
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 2.6e-49 198.7 117 78.6
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 3.4e-49 198.4 134 70.9
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 4.5e-49 198.0 134 70.9
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 4.5e-49 198.0 134 70.9
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 4.5e-49 198.0 134 70.9
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.5e-49 198.0 128 75.8
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 5.8e-49 197.6 134 70.1
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 7.6e-49 197.2 145 71.0
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 1.3e-48 196.4 127 74.0
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 8.4e-48 193.7 128 70.3
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 8.4e-48 193.7 128 71.1
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 1.4e-47 193.0 124 75.0
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.4e-47 193.0 118 76.3
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.9e-47 192.6 121 76.9
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.6e-46 189.5 128 68.0
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.6e-46 189.5 115 78.3
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 2.1e-46 189.1 128 71.1
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.1e-46 189.1 124 73.4
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 3.9e-45 184.9 128 67.2
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.9e-44 182.6 136 69.9
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 1.9e-44 182.6 121 74.4
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 5.7e-44 181.0 104 77.9
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 9.7e-44 180.3 117 69.2
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 3.4e-41 171.8 131 64.9
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.0e-40 170.2 137 62.8
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 1.1e-39 166.8 117 65.0
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 1.4e-39 166.4 123 61.8
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.8e-37 159.5 113 67.3
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 4.3e-36 154.8 91 78.0
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 2.0e-33 146.0 128 56.2
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 5.5e-31 137.9 115 54.8
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 2.7e-30 135.6 78 80.8
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 5.1e-29 131.3 75 78.7
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 5.3e-26 121.3 85 70.6
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.9e-24 115.5 77 71.4
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.9e-24 115.5 77 68.8
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 6.5e-24 114.4 73 72.6
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.7e-22 108.2 74 71.6
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 7.4e-20 100.9 56 87.5
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.2e-19 99.4 60 80.0
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.8e-19 99.0 70 64.3
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 2.6e-12 75.9 50 66.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 9.8e-12 73.9 60 60.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 5.4e-10 68.2 95 34.7
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 8.5e-08 60.8 42 66.7


User provided reference genes

Program Settings