Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 0.0e+00 1180.6 914 100.0
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 9.4e-242 840.9 921 76.9
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 2.3e-208 729.9 943 73.0
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.4e-205 720.7 940 76.2
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 2.4e-176 623.6 953 62.9
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.7e-174 617.5 939 65.4
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 2.6e-167 593.6 926 61.9
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 9.3e-165 585.1 961 55.7
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.8e-163 580.9 928 51.8
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 2.3e-163 580.5 927 64.9
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 3.7e-161 573.2 976 63.3
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 6.5e-158 562.4 928 57.2
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 3.3e-154 550.1 924 64.3
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.4e-136 491.5 999 57.0
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 3.0e-86 324.3 940 49.3
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.1e-85 322.4 945 47.2
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.8e-83 313.2 942 50.5
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.4e-80 305.4 248 69.0
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 2.4e-80 304.7 964 49.1
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 9.2e-80 302.8 980 45.3
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 3.5e-79 300.8 947 47.7
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.9e-77 295.0 831 48.3
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 7.3e-77 293.1 246 65.4
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 9.5e-77 292.7 246 65.4
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.6e-76 292.0 228 72.4
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 2.3e-75 288.1 246 65.9
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.2e-74 285.8 249 64.3
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 4.4e-74 283.9 945 45.9
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.3e-73 282.3 205 73.2
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.3e-73 282.3 940 47.9
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.2e-73 281.6 947 48.0
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.4e-72 278.9 943 46.4
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 2.4e-72 278.1 240 65.4
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 3.2e-72 277.7 246 66.7
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.1e-71 275.0 247 64.4
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 2.7e-71 274.6 939 45.8
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 3.5e-71 274.2 240 64.6
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 4.6e-71 273.9 939 45.8
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.0e-70 272.7 980 44.1
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.3e-70 272.3 247 62.3
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 3.9e-70 270.8 928 46.9
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 3.9e-70 270.8 928 46.9
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 3.9e-70 270.8 244 63.9
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.9e-69 268.5 243 62.6
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 7.3e-69 266.5 931 48.1
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.2e-68 265.8 247 62.8
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.6e-68 265.4 940 46.5
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.8e-68 264.6 272 59.2
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 4.7e-68 263.8 243 61.7
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.5e-66 258.8 974 48.0
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.5e-66 258.8 172 77.3
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 5.8e-66 256.9 235 61.3
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 7.6e-66 256.5 243 63.0
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 7.6e-66 256.5 939 47.5
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 9.9e-66 256.1 987 44.2
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.3e-65 255.8 932 45.9
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.7e-65 255.4 245 60.0
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 2.2e-65 255.0 997 47.2
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 1.1e-64 252.7 940 48.3
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.4e-64 252.3 231 64.5
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.9e-64 251.9 231 60.6
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 4.2e-64 250.8 935 45.2
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 7.1e-64 250.0 224 61.6
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 9.3e-64 249.6 937 49.1
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.2e-63 249.2 212 65.1
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 2.1e-63 248.4 234 61.1
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.6e-63 247.3 938 47.2
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 6.0e-63 246.9 221 61.1
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.3e-62 245.7 245 59.2
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.7e-62 245.4 265 58.5
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 3.9e-62 244.2 956 52.1
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 5.1e-62 243.8 242 61.2
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 5.1e-62 243.8 247 59.9
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.1e-61 242.7 244 57.4
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.5e-61 242.3 928 46.2
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.5e-61 242.3 161 77.0
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.9e-61 241.9 978 42.6
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.5e-61 241.5 946 44.9
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 3.3e-61 241.1 230 60.9
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 3.3e-61 241.1 927 46.3
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.3e-60 239.2 967 45.6
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.3e-60 239.2 937 46.9
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 4.8e-60 237.3 943 47.8
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.4e-59 235.7 938 51.5
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 5.3e-59 233.8 237 60.3
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 3.4e-58 231.1 214 60.3
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 9.9e-58 229.6 250 56.0
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 1.7e-57 228.8 150 76.7
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 2.2e-57 228.4 250 56.4
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.2e-57 228.4 135 85.2
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.8e-57 227.6 974 40.8
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.9e-57 227.3 239 56.5
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.9e-57 227.3 239 56.5
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 1.1e-56 226.1 251 57.0
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.1e-56 226.1 234 56.4
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 9.3e-56 223.0 134 82.8
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.6e-55 222.2 203 62.1
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 3.5e-55 221.1 967 42.1
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 7.9e-55 219.9 247 57.1
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.8e-54 218.8 252 54.8
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 2.3e-54 218.4 830 45.5
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 3.0e-54 218.0 217 60.4
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 3.9e-54 217.6 202 63.9
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 6.7e-54 216.9 979 42.2
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 2.8e-52 211.5 260 51.5
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 6.2e-52 210.3 966 41.7
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 8.1e-52 209.9 827 46.4
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 1.4e-51 209.1 173 61.8
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.8e-51 208.8 129 78.3
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 4.0e-51 207.6 934 44.3
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 7.6e-50 203.4 206 58.7
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.2e-49 201.8 113 87.6
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 4.2e-48 197.6 166 62.7
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 2.1e-47 195.3 134 72.4
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.7e-41 175.6 161 57.1
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 4.8e-36 157.5 199 48.2
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 7.2e-32 143.7 134 61.2
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 2.1e-31 142.1 143 54.5
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 4.1e-27 127.9 127 54.3
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 5.3e-27 127.5 738 44.4
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.2e-26 126.3 182 44.0
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 7.9e-23 113.6 216 37.5
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 2.6e-21 108.6 145 45.5
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.5e-18 99.4 86 62.8
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 1.3e-17 96.3 127 48.8
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.1e-15 89.0 62 71.0
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.7e-09 69.3 50 70.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 3.6e-07 61.6 121 32.2


User provided reference genes

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