Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 5.0e-120 434.5 227 100.0
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.8e-101 372.9 276 75.0
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 5.6e-95 351.3 274 69.3
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 9.6e-95 350.5 271 69.7
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 9.6e-95 350.5 262 74.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 4.4e-92 341.7 293 63.8
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 9.9e-92 340.5 264 67.8
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.4e-90 336.7 275 68.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 4.2e-90 335.1 275 68.4
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 3.5e-89 332.0 275 64.4
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.5e-89 332.0 274 65.7
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 4.6e-89 331.6 275 66.5
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.0e-89 331.3 275 66.9
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.7e-88 329.7 275 66.9
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 2.3e-88 329.3 274 66.8
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 3.9e-88 328.6 274 66.4
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.6e-88 327.8 274 65.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 6.6e-88 327.8 274 65.7
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.9e-87 326.2 274 65.7
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.3e-87 325.5 275 65.5
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 4.3e-87 325.1 274 65.3
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 4.3e-87 325.1 274 64.6
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 5.6e-87 324.7 275 64.4
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.6e-87 324.7 274 65.3
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 7.3e-87 324.3 274 64.6
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 7.3e-87 324.3 274 63.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.3e-86 323.6 274 65.0
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.3e-86 323.6 273 64.5
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.3e-86 323.6 270 65.9
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.1e-86 322.8 274 64.2
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.1e-86 322.8 274 65.3
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.1e-86 322.8 275 65.1
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.1e-86 322.8 259 67.2
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.8e-86 322.4 274 65.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.6e-86 322.0 274 64.2
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.6e-86 322.0 274 65.3
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 3.6e-86 322.0 273 64.1
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.6e-86 322.0 274 63.9
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-86 322.0 274 63.9
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.8e-86 321.6 274 63.9
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 4.8e-86 321.6 274 64.2
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 4.8e-86 321.6 272 63.6
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 4.8e-86 321.6 274 63.5
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 4.8e-86 321.6 275 65.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 6.2e-86 321.2 273 65.6
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.1e-85 320.5 274 64.6
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.1e-85 320.5 275 63.6
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.1e-85 320.5 275 64.7
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.4e-85 320.1 274 63.5
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.8e-85 319.7 274 64.2
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.8e-85 319.7 274 63.9
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.8e-85 319.7 274 63.5
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.8e-85 319.7 274 63.5
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.4e-85 319.3 274 63.5
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 2.4e-85 319.3 269 65.1
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.4e-85 319.3 274 64.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.1e-85 318.9 274 62.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 3.1e-85 318.9 267 64.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 5.3e-85 318.2 275 62.2
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 5.3e-85 318.2 275 63.6
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 5.3e-85 318.2 274 63.1
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 6.9e-85 317.8 273 64.1
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 9.0e-85 317.4 271 63.1
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.2e-84 317.0 274 63.1
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.5e-84 316.6 299 62.2
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.0e-84 316.2 274 62.4
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 9.9e-84 313.9 274 61.7
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 9.9e-84 313.9 273 61.9
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 9.9e-84 313.9 274 62.8
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.3e-83 313.5 274 62.0
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 2.9e-83 312.4 274 61.7
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 3.8e-83 312.0 274 61.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 6.4e-83 311.2 275 60.4
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 6.4e-83 311.2 275 60.4
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 8.4e-83 310.8 274 61.7
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.1e-82 310.5 274 62.4
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.1e-82 310.5 272 63.6
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.4e-82 310.1 281 60.5
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.9e-82 309.7 274 61.3
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.2e-82 308.9 271 62.0
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 4.2e-82 308.5 274 60.2
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 7.1e-82 307.8 273 61.2
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 9.3e-82 307.4 250 67.6
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 9.3e-82 307.4 273 61.9
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.6e-81 306.6 274 60.6
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.7e-81 305.8 257 66.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.1e-79 300.4 244 67.2
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.1e-79 300.4 244 67.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.9e-79 299.7 255 65.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.3e-79 298.5 317 55.5
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.3e-79 298.5 274 61.7
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.3e-79 298.5 261 62.5
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 9.6e-79 297.4 275 58.9
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.1e-78 296.2 345 51.6
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.8e-78 295.8 261 61.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.8e-78 295.8 318 54.1
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 3.7e-78 295.4 261 62.5
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.1e-77 293.9 270 60.7
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 4.0e-77 292.0 275 57.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 6.9e-77 291.2 271 57.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.2e-76 290.4 318 54.1
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.3e-75 287.0 254 61.0
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 2.2e-75 286.2 254 63.0
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 2.9e-75 285.8 261 60.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 4.9e-75 285.0 267 58.4
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.6e-73 280.0 275 56.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.5e-73 278.9 315 51.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.7e-70 268.9 272 57.4
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.4e-68 262.3 328 51.2
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 5.5e-66 255.0 274 54.0
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 5.5e-66 255.0 226 61.9
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 4.6e-65 251.9 227 60.8
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 4.6e-65 251.9 266 53.0
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.1e-65 251.5 274 53.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.1e-63 247.3 278 49.3
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.1e-63 247.3 274 50.7
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.3e-62 243.8 280 48.9
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 6.9e-61 238.0 249 55.4
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 7.7e-60 234.6 222 59.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.3e-59 233.8 222 60.4
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.9e-58 229.9 131 87.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 3.2e-58 229.2 127 89.8
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.4e-56 223.8 185 68.1
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 6.3e-54 214.9 219 56.6
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.4e-52 209.1 311 46.3
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.2e-50 202.2 274 45.3
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 4.7e-49 198.7 107 91.6
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 7.4e-47 191.4 255 47.1
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 2.7e-41 172.9 179 55.9
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 8.8e-40 167.9 94 88.3
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 5.7e-39 165.2 94 87.2
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.0e-35 154.5 94 83.0
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.1e-34 151.0 145 59.3
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 3.2e-34 149.4 141 55.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.0e-33 144.8 299 35.8
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.0e-32 144.4 84 84.5
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 8.5e-27 124.8 145 51.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.2e-26 122.5 71 83.1
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.2e-26 122.5 71 83.1
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 7.2e-26 121.7 77 75.3
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 9.4e-26 121.3 98 64.3
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.2e-25 120.9 72 79.2
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 3.1e-21 106.3 58 86.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.8e-16 90.5 248 26.6
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-15 87.0 87 63.2
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 8.3e-14 81.6 163 34.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.4e-13 80.1 44 84.1
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 2.4e-13 80.1 43 88.4
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 7.0e-13 78.6 144 32.6
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.0e-13 78.6 45 86.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.2e-12 77.8 150 35.3
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 3.9e-11 72.8 149 32.9
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 5.0e-11 72.4 150 36.0
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.0e-09 65.1 172 29.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.0e-08 62.8 162 29.6
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.9e-08 61.6 168 26.8
Ca_06100_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.2e-07 61.2 32 90.6
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.0e-07 60.5 141 29.1
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 9.8e-07 58.2 258 23.6
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.3e-06 57.8 117 33.3
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.7e-06 57.4 221 28.5
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.7e-06 57.4 221 28.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.2e-06 57.0 100 37.0
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.9e-06 56.6 153 28.8
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 3.7e-06 56.2 46 60.9
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 4.9e-06 55.8 244 28.7
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.9e-06 55.8 242 26.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 4.9e-06 55.8 211 26.5
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 6.4e-06 55.5 246 26.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 6.4e-06 55.5 217 27.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 6.4e-06 55.5 114 32.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 6.4e-06 55.5 215 27.4
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 6.4e-06 55.5 215 27.4
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 8.3e-06 55.1 242 28.1
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 8.3e-06 55.1 247 28.3
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 8.3e-06 55.1 212 27.8
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 8.3e-06 55.1 221 27.6


User provided reference genes

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