Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 1.4e-253 879.0 425 100.0
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 5.7e-226 787.3 420 91.2
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 9.9e-202 706.8 421 81.9
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 7.6e-194 680.6 421 77.4
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.4e-192 675.6 390 83.6
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 7.1e-192 674.1 420 75.5
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 2.3e-190 669.1 420 75.2
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.5e-189 666.4 418 75.4
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 4.4e-186 654.8 418 74.2
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 6.0e-183 644.4 420 73.1
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 8.7e-182 640.6 423 72.6
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 3.8e-169 598.6 381 74.3
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 4.9e-169 598.2 418 66.5
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.5e-165 586.6 420 66.7
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 5.6e-165 584.7 420 67.1
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 5.6e-165 584.7 417 65.9
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 4.8e-164 581.6 420 67.1
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 6.5e-161 571.2 418 65.1
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 4.2e-160 568.5 418 67.2
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.3e-158 563.5 418 63.4
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.7e-158 561.2 420 62.6
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 4.8e-156 555.1 417 64.3
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 8.2e-156 554.3 420 61.9
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.4e-155 552.7 419 62.8
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 3.1e-155 552.4 418 62.4
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 9.0e-155 550.8 449 61.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 9.0e-155 550.8 418 61.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.2e-154 550.4 418 65.6
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.0e-154 549.7 420 62.9
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.4e-154 548.9 418 62.2
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 5.9e-154 548.1 420 62.1
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.7e-153 546.6 421 62.2
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 2.2e-153 546.2 421 62.5
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.8e-153 545.4 420 61.4
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 5.0e-153 545.0 420 61.0
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.5e-153 544.7 418 62.7
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 8.5e-153 544.3 418 62.9
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.4e-152 543.5 420 61.7
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 9.4e-152 540.8 420 60.2
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 9.4e-152 540.8 420 61.2
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.2e-151 540.4 420 61.2
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.2e-151 540.4 417 62.1
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.6e-151 538.9 420 60.7
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 4.6e-151 538.5 418 60.8
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 6.1e-151 538.1 420 60.5
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 7.9e-151 537.7 420 61.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 8.8e-150 534.3 420 62.1
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.1e-149 533.9 419 61.1
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.5e-149 532.7 420 60.5
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.7e-149 530.8 421 61.0
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.3e-148 530.4 421 61.5
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.7e-148 530.0 420 60.2
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.2e-148 529.6 419 60.9
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 2.2e-148 529.6 383 66.3
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.8e-148 529.3 418 61.0
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 4.8e-148 528.5 417 60.9
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 6.3e-148 528.1 397 64.7
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.1e-147 527.3 421 61.3
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 1.4e-147 526.9 430 57.7
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.8e-147 526.6 421 61.0
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 3.1e-147 525.8 420 59.5
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 2.6e-146 522.7 418 59.8
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 2.6e-146 522.7 416 61.5
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 5.9e-146 521.5 416 61.1
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.0e-145 520.8 397 63.2
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 2.9e-145 519.2 420 59.5
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.2e-144 514.6 421 61.3
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.6e-143 513.5 417 59.0
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 2.1e-143 513.1 417 59.5
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 2.7e-143 512.7 397 61.7
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 3.0e-142 509.2 417 58.5
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.1e-141 507.3 418 58.9
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 9.7e-141 504.2 417 58.0
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 2.4e-139 499.6 417 57.8
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 5.3e-139 498.4 382 65.2
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 3.4e-138 495.7 417 59.0
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 3.4e-138 495.7 417 59.0
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 7.7e-138 494.6 418 58.4
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 7.7e-138 494.6 418 58.4
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.2e-137 493.0 418 56.9
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 3.8e-137 492.3 418 57.4
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 4.2e-136 488.8 418 56.9
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.2e-135 487.3 417 57.1
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 3.9e-134 482.3 432 55.6
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 4.4e-133 478.8 418 56.9
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 4.8e-132 475.3 418 54.5
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.3e-132 474.9 420 54.8
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.5e-130 469.2 420 54.3
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.5e-128 463.8 417 54.9
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 4.2e-128 462.2 340 63.5
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.2e-127 460.7 339 65.5
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 6.1e-127 458.4 386 56.2
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.8e-124 449.5 418 51.7
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 4.8e-124 448.7 418 52.6
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 9.1e-123 444.5 422 54.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.5e-122 442.2 337 62.3
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.3e-121 440.7 420 51.9
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 2.2e-121 439.9 418 52.9
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.2e-121 439.9 420 54.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 6.5e-121 438.3 415 55.2
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 2.8e-116 422.9 419 51.6
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 2.8e-116 422.9 419 51.6
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 2.8e-116 422.9 419 51.6
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.2e-111 407.5 420 50.5
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.2e-110 402.1 419 50.8
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 8.9e-110 401.4 417 50.6
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.4e-109 399.1 419 49.2
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 4.1e-107 392.5 420 48.8
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 5.4e-107 392.1 418 49.3
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.7e-106 389.8 289 63.0
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.0e-105 387.9 436 46.3
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.1e-103 380.2 436 45.4
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 9.2e-99 364.8 308 59.7
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-94 350.5 310 56.8
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 4.0e-86 322.8 420 44.0
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 4.0e-86 322.8 382 46.1
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 4.0e-86 322.8 415 41.0
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 8.9e-86 321.6 418 40.9
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.2e-84 317.0 346 51.4
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 6.4e-84 315.5 409 41.8
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.2e-79 301.2 418 39.2
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.1e-78 296.6 245 57.6
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.3e-76 291.2 208 65.9
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 2.9e-76 290.0 417 38.6
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 3.3e-72 276.6 421 39.4
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.1e-70 270.0 232 61.2
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.7e-68 264.2 313 47.6
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.1e-67 261.5 419 37.5
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.1e-63 247.3 158 73.4
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 3.2e-51 206.8 457 32.4
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 7.9e-50 202.2 145 65.5
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.9e-48 197.6 157 59.9
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 2.4e-46 190.7 490 29.6
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.7e-28 131.3 465 28.2
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.6e-26 124.8 111 55.0
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 5.1e-25 119.8 93 60.2
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 2.8e-23 114.0 73 67.1
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 2.4e-22 110.9 81 60.5
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 1.7e-20 104.8 72 59.7
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 5.5e-11 73.2 69 53.6
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 3.7e-07 60.5 115 36.5
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 4.1e-06 57.0 112 35.7
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 5.3e-06 56.6 112 36.6
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 7.0e-06 56.2 112 35.7
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 7.0e-06 56.2 120 36.7


User provided reference genes

Program Settings