Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 4.8e-67 257.7 128 100.0
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 5.7e-52 207.6 132 79.5
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 8.2e-51 203.8 132 78.8
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 3.4e-49 198.4 134 75.4
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 2.2e-48 195.7 125 77.6
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 6.5e-48 194.1 134 73.9
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 3.5e-46 188.3 134 71.6
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 9.7e-44 180.3 136 70.6
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.2e-43 179.1 135 68.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 6.9e-42 174.1 140 63.6
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.0e-40 170.2 137 65.7
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 8.5e-40 167.2 138 65.9
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 2.1e-38 162.5 128 63.3
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.1e-38 161.0 129 65.1
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 6.1e-38 161.0 129 65.1
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 6.1e-38 161.0 129 65.1
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.8e-37 159.5 129 64.3
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 3.0e-37 158.7 129 65.1
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.0e-37 158.7 129 65.1
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 3.9e-37 158.3 129 59.7
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.9e-37 158.3 132 61.4
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 3.9e-37 158.3 129 63.6
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 6.7e-37 157.5 132 57.6
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 3.3e-36 155.2 129 63.6
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.4e-36 154.1 133 62.4
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 6.3e-35 151.0 130 60.8
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 6.3e-35 151.0 129 58.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 6.9e-34 147.5 129 58.9
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 6.9e-34 147.5 132 54.5
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 4.5e-33 144.8 129 57.4
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 5.9e-33 144.4 132 53.8
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 1.1e-31 140.2 133 54.9
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.2e-30 136.7 78 87.2
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.2e-30 136.7 130 54.6
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.2e-30 136.7 129 51.9
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 6.1e-30 134.4 129 55.0
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 7.9e-30 134.0 127 52.8
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.0e-29 133.7 130 53.1
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 3.0e-29 132.1 130 54.6
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 3.0e-29 132.1 129 49.6
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 3.9e-29 131.7 132 55.3
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 8.8e-29 130.6 128 52.3
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.1e-28 130.2 128 52.3
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 3.3e-28 128.6 128 53.9
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 4.4e-28 128.3 129 52.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.7e-28 127.9 119 52.9
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 5.7e-28 127.9 131 52.7
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 7.4e-28 127.5 130 53.1
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 9.7e-28 127.1 127 50.4
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 9.7e-28 127.1 125 51.2
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 9.7e-28 127.1 130 51.5
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 2.2e-27 125.9 130 52.3
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.2e-27 125.9 125 51.2
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 2.2e-27 125.9 130 53.8
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 2.4e-26 122.5 130 48.5
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 3.1e-26 122.1 123 52.0
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 3.1e-26 122.1 130 48.5
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 3.1e-26 122.1 125 51.2
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.1e-26 122.1 135 51.9
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 5.3e-26 121.3 129 50.4
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 5.3e-26 121.3 130 49.2
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 7.0e-26 120.9 134 52.2
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 7.0e-26 120.9 132 53.0
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 2.0e-25 119.4 129 50.4
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.0e-24 117.1 126 50.8
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.2e-24 115.9 126 50.0
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 2.9e-24 115.5 131 48.9
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 6.5e-24 114.4 130 48.5
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 8.5e-24 114.0 129 54.3
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.5e-23 113.2 128 47.7
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.5e-23 112.5 126 50.0
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 9.4e-23 110.5 144 44.4
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 1.2e-22 110.2 127 47.2
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.2e-22 110.2 144 44.4
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.6e-22 109.8 129 46.5
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 2.1e-22 109.4 127 48.0
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.4e-21 106.7 130 45.4
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 2.3e-21 105.9 128 47.7
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 5.2e-21 104.8 140 41.4
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-20 103.6 128 48.4
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.5e-20 103.2 128 48.4
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.0e-20 102.8 105 48.6
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.3e-20 102.1 105 48.6
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.3e-20 102.1 105 48.6
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 4.4e-20 101.7 119 46.2
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 7.4e-20 100.9 116 44.0
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 7.4e-20 100.9 155 38.1
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.3e-19 100.1 129 42.6
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.7e-19 99.8 105 47.6
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 2.8e-19 99.0 132 43.9
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 2.8e-19 99.0 127 44.9
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 3.7e-19 98.6 119 42.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 6.3e-19 97.8 134 38.8
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 8.2e-19 97.4 138 42.0
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 8.2e-19 97.4 129 42.6
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.1e-18 97.1 133 41.4
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.4e-18 96.7 128 43.8
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.6e-17 93.2 123 36.6
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.6e-17 93.2 105 43.8
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 2.0e-17 92.8 125 36.8
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 4.5e-17 91.7 145 40.0
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 8.5e-16 87.4 73 64.4
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 1.9e-15 86.3 144 38.2
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 2.5e-15 85.9 118 41.5
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 3.2e-15 85.5 151 35.8
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 2.7e-14 82.4 122 42.6
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 6.1e-14 81.3 59 64.4
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.0e-13 79.0 197 32.0
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.1e-10 70.5 78 50.0
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.8e-10 69.7 81 45.7
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.6e-09 66.6 82 45.1
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.0e-08 63.9 73 43.8
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.2e-08 62.8 128 32.0
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 3.8e-08 62.0 142 32.4
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.5e-07 59.3 156 30.1


User provided reference genes

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