Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 0.0e+00 1119.0 564 100.0
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 4.5e-287 990.7 565 88.1
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 5.7e-282 973.8 560 87.5
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.3e-273 946.0 562 83.6
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 5.2e-267 924.1 562 81.9
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 4.4e-266 921.0 562 81.9
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 2.0e-263 912.1 567 80.2
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 6.0e-263 910.6 564 81.2
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 3.6e-260 901.4 554 82.3
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 2.1e-255 885.6 543 82.5
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 5.1e-254 880.9 545 79.8
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 8.9e-251 870.2 563 79.6
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 5.4e-240 834.3 570 72.1
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.5e-237 826.2 566 72.6
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 1.5e-237 826.2 553 74.0
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 1.9e-237 825.9 556 74.3
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 8.1e-236 820.5 561 73.1
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 8.1e-236 820.5 575 70.8
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.4e-235 819.7 561 72.9
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 1.4e-235 819.7 563 73.5
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.4e-235 819.7 566 73.0
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 1.2e-234 816.6 561 72.7
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 9.9e-234 813.5 553 73.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.4e-232 809.7 564 71.1
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.4e-232 809.7 558 72.6
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 4.6e-231 804.7 559 71.6
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 6.0e-231 804.3 547 72.8
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 3.7e-228 795.0 531 73.3
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.4e-227 792.3 548 72.8
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 4.0e-227 791.6 569 69.1
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 6.9e-227 790.8 544 72.8
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 5.8e-226 787.7 564 70.6
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 4.9e-225 784.6 566 70.5
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.1e-224 783.5 567 69.5
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.1e-224 783.5 560 70.5
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 7.1e-224 780.8 521 73.9
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 9.3e-224 780.4 549 70.5
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.6e-223 779.6 535 72.1
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.0e-222 776.9 565 69.7
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.0e-222 775.4 570 69.3
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 5.1e-222 774.6 564 70.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.1e-221 773.5 522 72.8
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 2.5e-221 772.3 516 73.4
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 9.6e-221 770.4 523 73.8
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.6e-220 769.6 524 73.1
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 6.2e-220 767.7 545 69.9
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 1.8e-219 766.1 561 69.9
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.4e-219 765.8 521 72.9
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 4.0e-219 765.0 564 69.0
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 4.0e-219 765.0 550 70.9
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 1.2e-218 763.5 550 70.2
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 2.0e-218 762.7 551 69.0
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 3.4e-218 761.9 563 68.7
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 3.4e-218 761.9 558 68.1
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 4.5e-218 761.5 561 68.8
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 7.6e-218 760.8 550 70.9
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 8.4e-217 757.3 511 73.4
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.1e-216 756.9 572 67.5
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.5e-216 755.7 514 72.4
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.5e-216 755.7 531 71.6
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 4.2e-216 755.0 537 69.3
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 7.1e-216 754.2 533 70.2
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 2.1e-215 752.7 551 68.8
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 3.5e-215 751.9 520 71.2
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 3.5e-215 751.9 482 75.1
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 4.6e-215 751.5 560 67.5
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 4.6e-215 751.5 538 69.3
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 7.9e-215 750.7 533 69.4
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.0e-214 750.4 520 71.0
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.8e-214 749.6 541 70.2
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 3.9e-214 748.4 520 70.4
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 8.7e-214 747.3 533 70.0
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.1e-213 746.9 511 72.6
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.3e-213 745.3 578 66.6
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.6e-212 743.0 570 67.2
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 1.1e-211 740.3 552 68.3
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.4e-211 740.0 521 69.9
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.4e-211 740.0 533 69.4
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 1.8e-211 739.6 536 68.1
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 2.2e-209 732.6 505 72.7
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 2.2e-209 732.6 516 71.1
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.9e-209 732.3 577 65.9
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 5.0e-209 731.5 535 68.6
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 2.5e-208 729.2 481 75.5
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.1e-207 726.1 512 71.5
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.0e-206 722.2 512 70.9
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 2.5e-205 719.2 422 79.9
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 3.3e-205 718.8 455 75.2
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 4.3e-205 718.4 491 72.7
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 1.4e-203 713.4 505 68.7
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 3.1e-203 712.2 539 65.3
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 4.1e-203 711.8 611 61.5
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 9.1e-203 710.7 460 74.8
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 3.4e-202 708.8 565 64.8
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.7e-201 706.4 547 67.3
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 8.5e-201 704.1 572 63.8
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 5.3e-187 658.3 554 64.1
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 3.3e-181 639.0 522 62.6
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.7e-180 636.7 372 81.7
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 3.5e-178 629.0 420 73.3
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 2.7e-162 576.2 386 74.6
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.1e-155 554.3 413 67.3
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 3.5e-154 549.3 528 54.0
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.3e-153 547.4 492 55.5
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 5.0e-153 545.4 411 67.9
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 6.6e-145 518.5 437 57.9
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 4.6e-138 495.7 429 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 9.9e-117 424.9 493 46.5
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 6.4e-116 422.2 523 48.0
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.3e-111 407.9 520 47.1
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.5e-109 401.0 524 45.8
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 4.5e-109 399.4 572 41.3
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 4.5e-109 399.4 450 50.2
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 7.9e-106 388.7 521 45.9
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 3.0e-105 386.7 480 44.8
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.9e-102 375.6 537 45.3
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 6.5e-100 369.0 255 72.2
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 5.7e-96 355.9 555 43.2
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.0e-84 318.5 169 96.4
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.8e-81 307.8 176 83.5
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 9.7e-80 302.0 480 37.3
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 2.7e-58 230.7 162 75.3
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.2e-53 215.3 204 56.9
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 4.1e-38 163.7 138 60.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.1e-35 155.6 131 60.3
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 4.4e-32 143.7 105 70.5
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.1e-30 139.0 86 77.9
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.5e-24 118.6 125 49.6
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 3.0e-20 104.4 104 55.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.4e-17 94.7 58 75.9
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 6.6e-12 76.6 131 39.7
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.9e-11 75.1 142 35.9
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 6.2e-10 70.1 125 39.2
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.4e-09 68.9 144 35.4
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 2.0e-08 65.1 150 36.0
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 3.8e-07 60.8 38 73.7


User provided reference genes

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