Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 4.5e-280 967.2 475 100.0
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 7.1e-241 837.0 482 87.1
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 2.6e-235 818.5 482 84.4
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 2.3e-231 805.4 489 82.2
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 4.3e-230 801.2 486 81.9
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 4.4e-227 791.2 475 82.3
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 1.6e-213 746.1 490 77.6
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 1.4e-212 743.0 432 84.0
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 3.9e-207 724.9 428 80.8
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 6.7e-207 724.2 486 74.9
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 3.1e-204 715.3 449 77.7
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 4.0e-204 714.9 485 73.0
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 1.4e-201 706.4 486 71.4
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.9e-201 706.1 420 81.0
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 3.2e-201 705.3 444 80.2
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.2e-200 703.4 420 80.5
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 4.6e-200 701.4 431 78.4
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 1.0e-199 700.3 419 80.9
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 1.8e-199 699.5 474 72.4
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 3.9e-199 698.4 420 80.0
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 1.3e-197 693.3 485 71.3
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 1.3e-197 693.3 450 74.7
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 2.8e-197 692.2 418 81.6
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 3.1e-196 688.7 479 69.7
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 4.1e-196 688.3 505 68.3
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 5.3e-196 688.0 492 70.5
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 9.0e-196 687.2 427 76.8
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 4.5e-195 684.9 429 75.8
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 7.6e-195 684.1 469 71.0
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 1.3e-194 683.3 426 76.5
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 2.9e-194 682.2 469 71.2
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 5.0e-194 681.4 419 76.6
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 8.5e-194 680.6 429 80.2
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 1.9e-193 679.5 436 75.9
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 2.5e-193 679.1 419 76.8
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 2.5e-193 679.1 421 77.4
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 5.5e-193 677.9 420 76.9
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 7.2e-193 677.6 477 71.1
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 4.6e-192 674.9 428 75.0
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 1.3e-191 673.3 427 76.1
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 1.3e-191 673.3 470 70.0
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 3.0e-191 672.2 418 76.8
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 3.0e-191 672.2 430 76.0
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 1.5e-190 669.8 446 72.9
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 3.3e-190 668.7 422 76.5
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 9.7e-190 667.2 429 73.4
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 3.7e-189 665.2 423 74.0
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 1.1e-188 663.7 429 73.9
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 6.9e-188 661.0 429 73.2
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 2.0e-187 659.4 422 74.2
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 2.0e-187 659.4 443 72.9
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 2.6e-187 659.1 469 69.9
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 3.4e-187 658.7 424 73.6
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 7.7e-187 657.5 428 73.4
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 1.3e-186 656.8 434 73.5
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 2.9e-186 655.6 424 73.3
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 2.9e-186 655.6 422 73.9
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 2.9e-186 655.6 424 73.3
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 1.1e-185 653.7 463 68.0
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 1.9e-185 652.9 446 71.3
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 4.2e-185 651.7 423 73.5
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 1.2e-184 650.2 422 73.5
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 3.6e-184 648.7 445 70.6
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 3.6e-184 648.7 427 74.9
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 4.6e-184 648.3 419 73.7
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 2.0e-182 642.9 420 72.1
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 1.1e-180 637.1 377 81.4
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 4.7e-176 621.7 487 65.7
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 2.6e-174 615.9 427 71.2
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 4.4e-174 615.1 454 68.1
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 1.7e-173 613.2 427 71.0
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 1.8e-172 609.8 385 76.6
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 2.4e-172 609.4 378 77.0
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 6.5e-170 601.3 385 74.5
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 8.5e-170 600.9 384 75.5
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 1.1e-169 600.5 384 74.7
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 7.2e-169 597.8 443 67.3
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.0e-167 594.0 468 64.7
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 3.0e-167 592.4 380 74.2
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 2.2e-165 586.3 421 67.9
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 5.9e-163 578.2 420 69.5
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 3.6e-160 568.9 339 80.2
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 3.6e-160 568.9 419 66.8
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 5.7e-158 561.6 418 64.6
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 7.2e-153 544.7 406 65.5
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 1.6e-152 543.5 418 62.0
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 1.5e-150 537.0 353 73.9
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 6.6e-146 521.5 425 63.1
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 2.9e-141 506.1 313 76.4
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 1.6e-136 490.3 326 71.5
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 3.7e-133 479.2 423 58.9
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 1.1e-121 441.0 462 49.8
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 4.0e-119 432.6 419 53.5
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 1.1e-108 397.9 267 70.4
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 6.6e-106 388.7 246 74.4
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 3.5e-99 366.3 442 47.1
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 1.1e-87 328.2 322 54.3
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 4.0e-87 326.2 322 54.3
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 9.0e-87 325.1 201 74.6
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 5.8e-86 322.4 262 59.2
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 2.4e-79 300.4 224 68.8
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 1.4e-68 264.6 211 64.0
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 6.1e-67 259.2 184 70.1
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 3.1e-63 246.9 179 68.2
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 1.2e-62 245.0 306 48.7
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 3.8e-61 240.0 441 38.8
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 6.8e-42 176.0 93 90.3
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 6.5e-37 159.5 89 88.8
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 9.5e-36 155.6 138 56.5
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 1.1e-31 142.1 92 76.1
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 2.9e-16 90.9 58 72.4
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 4.0e-10 70.5 42 81.0
Glyma.07G113951 Glycine max HOM05D007030 ORTHO05D215801 5.4e-07 60.1 33 84.8
Aa31LG7G15150 Aethionema arabicum HOM05D007030 ORTHO05D009159 9.2e-07 59.3 43 62.8


User provided reference genes

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