Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G104100 Glycine max HOM05D007059 ORTHO05D009155 3.9e-122 441.4 215 100.0
Glyma.12G029100 Glycine max HOM05D007059 ORTHO05D009155 3.4e-118 428.3 215 95.8
VMungo1127G1389 Vigna mungo HOM05D007059 ORTHO05D009155 1.1e-111 406.8 215 90.2
Phvul.011G032300 Phaseolus vulgaris HOM05D007059 ORTHO05D009155 2.0e-110 402.5 215 91.2
Lalb_Chr01g0001591 Lupinus albus HOM05D007059 ORTHO05D009155 1.8e-98 362.8 225 80.0
Ca_03042_v3 Cicer arietinum L. HOM05D007059 ORTHO05D009155 7.4e-97 357.5 222 81.1
TPR.G21564 Trifolium pratense HOM05D007059 ORTHO05D009155 1.7e-96 356.3 223 79.8
Medtr4g074210 Medicago truncatula HOM05D007059 ORTHO05D009155 1.8e-95 352.8 226 79.2
Lj3g0001367 Lotus japonicus HOM05D007059 ORTHO05D009155 4.1e-95 351.7 224 78.1
Psat7g174240 Pisum sativum HOM05D007059 ORTHO05D009155 2.9e-93 345.5 223 78.5
arahy.Tifrunner.gnm1.ann1.NRJ0Q8 Arachis hypogaea HOM05D007059 ORTHO05D009155 2.6e-89 332.4 213 78.9
arahy.Tifrunner.gnm1.ann1.PC0HA4 Arachis hypogaea HOM05D007059 ORTHO05D009155 2.6e-89 332.4 213 78.9
GSVIVG01010187001 Vitis vinifera HOM05D007059 ORTHO05D009155 1.9e-84 316.2 224 71.4
CiPaw.05G167400 Carya illinoinensis HOM05D007059 ORTHO05D009155 1.1e-76 290.4 228 65.4
Thecc.02G295400 Theobroma cacao HOM05D007059 ORTHO05D009155 9.4e-76 287.3 234 63.2
Ciclev10033522m.g Citrus clementina HOM05D007059 ORTHO05D009155 4.7e-75 285.0 220 68.6
Prupe.1G344600 Prunus persica HOM05D007059 ORTHO05D009155 4.7e-75 285.0 226 65.0
CSS0038027 Camellia sinensis var. sinensis HOM05D007059 ORTHO05D009155 2.3e-74 282.7 225 64.0
RcHm_v2.0_Chr4g0446371 Rosa chinensis HOM05D007059 ORTHO05D009155 5.2e-74 281.6 223 65.5
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.5e-73 280.0 227 64.3
vmacro08590 Vaccinium macrocarpon HOM05D007059 ORTHO05D009155 1.5e-73 280.0 220 64.1
FvH4_4g36660 Fragaria vesca HOM05D007059 ORTHO05D009155 2.0e-73 279.6 223 64.6
FAN12G0665 Fragaria x ananassa HOM05D007059 ORTHO05D009155 2.0e-73 279.6 223 64.6
Atru.chr11.1222 Acer truncatum HOM05D007059 ORTHO05D009155 2.6e-73 279.3 226 65.0
COL.COLO4_16620 Corchorus olitorius HOM05D007059 ORTHO05D009155 2.6e-73 279.3 227 64.3
FAN07G2854 Fragaria x ananassa HOM05D007059 ORTHO05D009155 3.4e-73 278.9 223 65.0
Rhsim04G0168700 Rhododendron simsii HOM05D007059 ORTHO05D009155 4.4e-73 278.5 220 64.5
Potri.010G169700 Populus trichocarpa HOM05D007059 ORTHO05D009155 2.2e-72 276.2 243 61.7
Nn4g24915 Nelumbo nucifera HOM05D007059 ORTHO05D009155 2.8e-72 275.8 226 63.7
Sabra10G0129500 Salix brachista HOM05D007059 ORTHO05D009155 3.7e-72 275.4 243 61.3
TAR629G1440 Trochodendron aralioides HOM05D007059 ORTHO05D009155 3.7e-72 275.4 226 62.8
Manes.16G044801 Manihot esculenta HOM05D007059 ORTHO05D009155 4.8e-72 275.0 220 65.0
MD16G1006000 Malus domestica HOM05D007059 ORTHO05D009155 8.3e-72 274.2 227 64.8
Actinidia38411 Actinidia chinensis HOM05D007059 ORTHO05D009155 4.5e-70 268.5 225 61.8
Lj3A851T65 Lonicera japonica HOM05D007059 ORTHO05D009155 4.5e-70 268.5 232 61.2
Eucgr.G02016 Eucalyptus grandis HOM05D007059 ORTHO05D009155 7.7e-70 267.7 224 61.2
Peaxi162Scf01172g00004 Petunia axillaris HOM05D007059 ORTHO05D009155 2.2e-69 266.2 169 75.7
PSO782G1004 Papaver somniferum HOM05D007059 ORTHO05D009155 8.5e-69 264.2 231 59.7
MELO3C020030.2 Cucumis melo HOM05D007059 ORTHO05D009155 2.5e-68 262.7 217 63.1
Nitab4.5_0002113g0150 Nicotiana tabacum HOM05D007059 ORTHO05D009155 3.2e-68 262.3 187 70.1
PSO063G1277 Papaver somniferum HOM05D007059 ORTHO05D009155 4.2e-68 261.9 231 59.3
Nitab4.5_0007261g0020 Nicotiana tabacum HOM05D007059 ORTHO05D009155 5.5e-68 261.5 186 69.4
PGSC0003DMG400032539 Solanum tuberosum HOM05D007059 ORTHO05D009155 9.4e-68 260.8 168 76.2
CAN.G624.23 Capsicum annuum HOM05D007059 ORTHO05D009155 1.2e-67 260.4 168 75.6
ClCG11G001160 Citrullus lanatus HOM05D007059 ORTHO05D009155 1.2e-67 260.4 226 60.6
Sopen04g004490 Solanum pennellii HOM05D007059 ORTHO05D009155 2.7e-67 259.2 168 75.0
MBI06_g22349_MAGBIO Magnolia biondii HOM05D007059 ORTHO05D009155 3.6e-67 258.8 184 72.3
Gohir.A01G145900 Gossypium hirsutum HOM05D007059 ORTHO05D009155 6.1e-67 258.1 233 59.2
Sed0015909 Sechium edule HOM05D007059 ORTHO05D009155 8.0e-67 257.7 220 61.8
Sc10g0008670 Simmondsia chinensis HOM05D007059 ORTHO05D009155 1.4e-66 256.9 172 76.2
Solyc04g009370.4 Solanum lycopersicum HOM05D007059 ORTHO05D009155 1.4e-66 256.9 168 74.4
Aqoxy3G04246 Aquilegia oxysepala HOM05D007059 ORTHO05D009155 4.0e-66 255.4 221 61.5
Gorai.002G167400 Gossypium raimondii HOM05D007059 ORTHO05D009155 4.0e-66 255.4 229 60.3
Gohir.D01G138500 Gossypium hirsutum HOM05D007059 ORTHO05D009155 2.0e-65 253.1 225 60.9
unitig_27.g25281 Utricularia gibba HOM05D007059 ORTHO05D009155 4.9e-64 248.4 213 63.4
Cc11_g00200 Coffea canephora HOM05D007059 ORTHO05D009155 1.1e-63 247.3 225 60.0
ECA234G4546 Erigeron canadensis HOM05D007059 ORTHO05D009155 2.4e-63 246.1 155 78.7
Lsat_1_v5_gn_4_26421 Lactuca sativa HOM05D007059 ORTHO05D009155 2.4e-63 246.1 225 58.7
BcaC09g48947 Brassica carinata HOM05D007059 ORTHO05D009155 4.1e-63 245.4 221 59.3
C01p44250 Brassica napus HOM05D007059 ORTHO05D009155 4.1e-63 245.4 221 59.3
BolC1t04385H Brassica oleracea HOM05D007059 ORTHO05D009155 4.1e-63 245.4 221 59.3
MSTRG.2053 Avicennia marina HOM05D007059 ORTHO05D009155 1.2e-62 243.8 131 88.5
Cpa.g.sc298.2 Carica papaya HOM05D007059 ORTHO05D009155 1.2e-62 243.8 213 62.0
Sp3g17910 Schrenkiella parvula HOM05D007059 ORTHO05D009155 2.0e-62 243.0 223 59.2
AUR62017646 Chenopodium quinoa HOM05D007059 ORTHO05D009155 2.7e-62 242.7 176 71.6
HanXRQChr01g0028541 Helianthus annuus HOM05D007059 ORTHO05D009155 3.5e-62 242.3 131 87.0
CANSAT35G1437 Cannabis sativa HOM05D007059 ORTHO05D009155 4.5e-62 241.9 143 83.2
Migut.E00704 Erythranthe guttata HOM05D007059 ORTHO05D009155 4.5e-62 241.9 217 59.4
AL3G33460 Arabidopsis lyrata HOM05D007059 ORTHO05D009155 5.9e-62 241.5 224 59.4
Carub.0003s1980 Capsella rubella HOM05D007059 ORTHO05D009155 5.9e-62 241.5 223 58.7
CARHR095430 Cardamine hirsuta HOM05D007059 ORTHO05D009155 5.9e-62 241.5 223 59.2
Haze_11738 Corylus avellana HOM05D007059 ORTHO05D009155 7.7e-62 241.1 206 61.7
AUR62012864 Chenopodium quinoa HOM05D007059 ORTHO05D009155 1.3e-61 240.4 176 70.5
Thhalv10021482m.g Eutrema salsugineum HOM05D007059 ORTHO05D009155 2.9e-61 239.2 223 58.7
ATR0124G031 Amborella trichopoda HOM05D007059 ORTHO05D009155 3.3e-60 235.7 140 79.3
EL10Ac9g22903 Beta vulgaris HOM05D007059 ORTHO05D009155 3.3e-60 235.7 162 73.5
Duzib251G0490 Durio zibethinus HOM05D007059 ORTHO05D009155 2.8e-59 232.6 228 57.0
A01p34850 Brassica napus HOM05D007059 ORTHO05D009155 6.1e-59 231.5 170 69.4
BraA01t03568Z Brassica rapa HOM05D007059 ORTHO05D009155 6.1e-59 231.5 170 69.4
HPP92_002491 Vanilla planifolia HOM05D007059 ORTHO05D009155 5.2e-58 228.4 149 75.8
HPP92_002544 Vanilla planifolia HOM05D007059 ORTHO05D009155 5.2e-58 228.4 149 75.8
Aa31LG8G6740 Aethionema arabicum HOM05D007059 ORTHO05D009155 1.2e-57 227.3 128 83.6
TWI77G0260 Tripterygium wilfordii HOM05D007059 ORTHO05D009155 1.5e-57 226.9 200 61.5
Oeu027905.1 Olea europaea HOM05D007059 ORTHO05D009155 3.4e-57 225.7 150 76.0
Zm00001eb259420 Zea mays HOM05D007059 ORTHO05D009155 7.0e-55 218.0 126 81.7
Hund08500 Selenicereus undatus HOM05D007059 ORTHO05D009155 1.7e-53 213.4 154 72.1
THA.LOC104801903 Tarenaya hassleriana HOM05D007059 ORTHO05D009155 3.0e-53 212.6 205 56.6
SGA_v2.0_scaffold88G27235 Striga asiatica HOM05D007059 ORTHO05D009155 4.3e-52 208.8 127 81.1
Pp3c10_16080 Physcomitrium patens HOM05D007059 ORTHO05D009155 5.6e-52 208.4 187 57.2
Pp3c2_14430 Physcomitrium patens HOM05D007059 ORTHO05D009155 9.5e-52 207.6 182 56.6
Migut.E00613 Erythranthe guttata HOM05D007059 ORTHO05D009155 2.8e-51 206.1 129 77.5
AagrBONN_evm.TU.Sc2ySwM_344.1288 Anthoceros agrestis HOM05D007059 ORTHO05D009155 1.8e-50 203.4 150 65.3
SMO114G0039 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 4.0e-50 202.2 125 76.8
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.9e-48 196.1 143 69.9
Mapoly0055s0010 Marchantia polymorpha HOM05D007059 ORTHO05D009155 2.4e-47 193.0 163 58.3
Actinidia13703 Actinidia chinensis HOM05D007059 ORTHO05D009155 1.2e-43 180.6 167 58.7
Dinv01917 Davidia involucrata HOM05D007059 ORTHO05D009155 2.1e-43 179.9 223 47.5
PGR031G0357 Punica granatum HOM05D007059 ORTHO05D009155 2.9e-40 169.5 227 45.4
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 1.5e-36 157.1 133 63.9
CBR_g48375 Chara braunii HOM05D007059 ORTHO05D009155 1.2e-35 154.1 122 57.4
CsaV3_5G013210 Cucumis sativus L. HOM05D007059 ORTHO05D009155 2.2e-32 143.3 166 51.2
Actinidia14379 Actinidia chinensis HOM05D007059 ORTHO05D009155 3.5e-22 109.4 56 89.3
AT3G19900 Arabidopsis thaliana HOM05D007059 ORTHO05D009155 1.3e-21 107.5 156 43.6
BolC5t33201H Brassica oleracea HOM05D007059 ORTHO05D009155 5.1e-21 105.5 84 66.7
SEGI_27177 Sequoiadendron giganteum HOM05D007059 ORTHO05D009155 9.6e-20 101.3 61 77.0
Cre01.g007050 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D009155 9.0e-18 94.7 115 42.6
SMO364G0884 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 4.9e-16 89.0 67 64.2
Cre03.g197850 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D034487 1.5e-12 77.4 155 28.4
BraA05t21808Z Brassica rapa HOM05D007059 ORTHO05D040342 1.1e-10 71.2 45 82.2
A05p29230 Brassica napus HOM05D007059 ORTHO05D040342 9.0e-10 68.2 45 80.0
MCO14G049 Micromonas commoda HOM05D007059 ORTHO05D009155 9.0e-10 68.2 101 34.7


User provided reference genes

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