Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 2.0e-228 795.4 399 100.0
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 1.7e-208 729.2 384 95.1
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 8.7e-200 700.3 384 90.6
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.3e-195 686.4 384 89.6
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 7.9e-185 650.6 385 86.2
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.9e-178 629.4 387 81.9
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 4.2e-178 628.2 385 82.9
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.2e-174 614.0 391 79.8
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 6.9e-173 610.9 391 79.5
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 5.0e-171 604.7 385 79.5
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 8.4e-171 604.0 420 76.0
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 2.5e-170 602.4 380 80.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 5.7e-167 591.3 385 76.9
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 4.8e-166 588.2 357 80.1
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 8.2e-166 587.4 374 77.8
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.8e-165 586.3 389 76.1
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.4e-165 585.9 387 76.7
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 5.9e-164 581.3 385 75.8
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.0e-163 580.5 370 77.6
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.2e-163 579.3 346 81.5
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.2e-163 579.3 354 80.2
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 3.8e-163 578.6 358 79.1
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 1.1e-162 577.0 355 79.2
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.5e-162 575.9 367 77.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.5e-162 575.9 385 76.4
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 5.5e-162 574.7 378 75.7
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.2e-162 574.3 381 74.3
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 7.2e-162 574.3 354 79.4
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 9.4e-162 573.9 376 76.9
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 9.4e-162 573.9 381 74.3
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 9.4e-162 573.9 378 75.4
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.6e-161 572.0 367 76.6
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.1e-161 571.2 381 74.0
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 7.9e-161 570.9 385 74.8
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.0e-160 570.5 389 75.1
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.4e-160 570.1 350 79.1
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.8e-160 569.7 385 74.8
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.3e-160 569.3 378 75.4
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.3e-159 565.5 373 74.5
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 7.4e-159 564.3 367 75.7
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 7.4e-159 564.3 354 77.1
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 9.7e-159 563.9 367 75.7
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.3e-158 563.5 367 75.5
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.3e-158 563.5 367 75.7
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.2e-158 562.8 382 73.3
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 3.7e-158 562.0 382 73.3
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.4e-157 560.1 372 74.2
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.1e-157 558.9 372 73.7
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.1e-157 558.9 387 71.8
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 9.1e-157 557.4 354 76.0
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.2e-156 557.0 374 72.5
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.5e-156 556.6 357 75.6
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 2.0e-156 556.2 349 77.7
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.0e-156 556.2 354 76.3
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.6e-156 555.8 354 76.6
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 5.9e-156 554.7 354 75.7
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 5.9e-156 554.7 362 73.5
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.0e-155 553.9 354 75.4
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.3e-155 553.5 365 76.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 2.9e-155 552.4 383 72.6
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 2.9e-155 552.4 346 77.7
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 3.8e-155 552.0 367 73.8
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.0e-155 551.6 390 70.0
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.1e-154 550.4 403 70.2
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.5e-154 549.3 389 72.0
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 7.2e-154 547.7 389 72.0
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 7.2e-154 547.7 376 73.7
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 9.4e-154 547.4 354 75.4
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.2e-153 547.0 346 76.3
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 2.1e-153 546.2 382 72.3
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 2.1e-153 546.2 382 72.3
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 2.1e-153 546.2 389 69.4
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.6e-153 545.4 377 73.2
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 3.6e-153 545.4 368 74.2
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 6.1e-153 544.7 346 77.5
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.4e-152 543.5 354 73.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.8e-152 543.1 371 71.7
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 3.9e-152 542.0 382 71.7
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 3.9e-152 542.0 382 71.7
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 2.6e-151 539.3 363 71.6
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.6e-151 539.3 356 74.4
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 2.4e-149 532.7 346 73.7
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.9e-148 528.1 346 73.4
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 8.5e-147 524.2 359 73.5
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 5.2e-144 515.0 365 71.0
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 8.8e-144 514.2 395 65.6
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.0e-143 513.1 356 69.1
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 9.7e-143 510.8 356 69.1
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.8e-142 509.2 373 70.0
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 4.8e-142 508.4 326 75.8
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 8.5e-139 497.7 349 71.6
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.2e-137 493.8 501 55.9
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 6.1e-137 491.5 318 76.4
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 8.3e-134 481.1 367 63.5
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.8e-133 479.9 406 62.8
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.6e-132 476.9 362 63.0
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 4.5e-132 475.3 373 65.7
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.5e-130 469.5 375 61.3
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.8e-128 463.4 286 79.7
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.4e-125 453.0 300 72.0
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 1.5e-122 443.7 336 63.7
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 7.2e-122 441.4 295 71.5
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.8e-121 439.5 298 73.5
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 2.3e-120 436.4 326 68.4
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.0e-116 423.3 308 67.2
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.1e-114 417.5 354 56.2
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.5e-114 417.2 350 62.3
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.3e-110 404.1 266 74.8
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.1e-109 399.1 264 72.7
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.5e-103 380.6 319 58.9
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.3e-99 367.5 254 72.4
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 1.5e-98 364.0 318 60.4
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 7.6e-95 351.7 238 71.8
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.1e-92 343.6 371 48.8
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 3.2e-85 319.7 354 46.3
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 6.2e-81 305.4 354 46.3
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 4.6e-76 289.3 263 62.4
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.7e-67 258.8 183 74.3
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.8e-65 252.7 262 50.0
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.0e-54 218.4 159 67.9
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-49 199.1 189 56.1
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 2.0e-47 194.1 125 72.8
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.9e-45 187.6 292 37.3
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 3.3e-42 176.8 140 72.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.0e-34 151.0 142 57.7
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 8.2e-33 145.6 83 83.1
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.2e-28 131.7 76 82.9
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 6.1e-28 129.4 383 31.1
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 3.3e-26 123.6 83 67.5
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 4.8e-25 119.8 97 66.0
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.7e-23 112.5 95 61.1
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.6e-20 103.6 64 70.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.7e-17 93.6 70 67.1
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.7e-15 87.4 68 60.3
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 8.5e-14 82.4 49 71.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.9e-13 81.3 62 66.1
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 7.5e-10 69.3 51 62.7
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 4.1e-08 63.5 57 50.9
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 7.7e-07 59.3 183 29.5
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.7e-06 58.2 56 51.8
CBR_g3871 Chara braunii HOM05D005532 ORTHO05D006873 8.6e-06 55.8 115 33.0


User provided reference genes

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