Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 0.0e+00 1159.8 621 100.0
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 5.2e-292 1007.3 620 86.3
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 8.2e-290 1000.0 623 85.9
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.6e-285 984.6 634 84.4
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 2.1e-261 905.6 612 81.9
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 9.9e-243 843.6 642 72.7
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.3e-239 832.4 632 71.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.9e-239 831.6 640 72.0
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.6e-235 818.9 629 72.2
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 3.3e-230 802.0 636 69.5
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 4.9e-226 788.1 634 68.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.5e-214 750.0 617 68.2
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 7.4e-214 747.7 628 64.6
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 3.5e-208 728.8 629 63.3
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.4e-204 716.8 636 63.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.3e-202 710.3 632 62.2
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.2e-202 709.5 630 61.6
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.3e-199 699.5 636 59.1
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 5.1e-199 698.4 625 61.9
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 7.4e-198 694.5 636 58.6
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.7e-197 692.2 637 59.8
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 4.5e-195 685.3 635 59.8
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.5e-193 679.5 631 59.9
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 3.2e-193 679.1 643 58.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 4.2e-193 678.7 634 60.9
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 5.5e-193 678.3 635 58.0
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 8.8e-191 671.0 629 58.3
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 8.8e-191 671.0 629 58.3
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-190 670.2 643 57.9
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-190 670.2 643 57.9
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.7e-190 668.3 643 57.5
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 5.7e-190 668.3 635 57.2
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 7.4e-190 667.9 636 59.6
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-189 667.2 643 57.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 2.2e-189 666.4 629 58.3
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 8.2e-189 664.5 643 57.4
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-188 664.1 643 57.5
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-188 662.9 643 57.4
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 4.1e-188 662.1 630 58.9
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 6.9e-188 661.4 627 57.3
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 9.1e-188 661.0 635 58.3
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.6e-187 659.4 643 57.2
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 3.4e-187 659.1 638 57.5
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.9e-187 658.3 631 58.6
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.0e-186 657.5 630 59.0
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 6.5e-186 654.8 629 56.9
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.8e-183 646.7 629 57.6
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 1.8e-183 646.7 634 57.4
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 9.1e-180 634.4 656 56.9
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.5e-179 633.6 641 56.2
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.5e-179 633.6 632 56.6
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.0e-179 633.3 637 56.5
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 2.6e-179 632.9 608 57.2
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.6e-179 632.9 632 56.2
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 4.5e-179 632.1 632 57.0
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 7.7e-179 631.3 644 55.6
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 5.0e-178 628.6 638 54.5
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.0e-175 620.9 632 55.2
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.4e-175 620.5 632 55.1
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 5.2e-175 618.6 640 54.8
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 5.7e-174 615.1 640 55.0
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 5.3e-172 608.6 637 53.7
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.7e-170 603.6 647 53.0
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 6.5e-170 601.7 639 53.5
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 8.5e-170 601.3 632 54.0
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 9.4e-169 597.8 631 52.6
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.4e-167 594.0 645 52.2
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.2e-166 590.9 640 52.5
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 4.4e-166 589.0 653 51.8
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 5.7e-166 588.6 633 51.7
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 7.0e-164 581.6 623 52.6
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.2e-163 580.9 640 53.9
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.5e-163 579.3 644 50.9
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 7.7e-163 578.2 632 51.1
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.5e-161 573.9 633 51.8
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 9.4e-161 571.2 641 49.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 8.0e-160 568.2 633 51.2
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 2.6e-158 563.1 633 50.6
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 2.6e-158 563.1 633 50.6
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.8e-157 558.9 633 50.6
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 4.8e-157 558.9 328 91.2
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.3e-157 558.5 633 50.2
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 6.3e-157 558.5 633 52.1
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.1e-156 557.8 636 51.9
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.1e-156 557.8 410 72.7
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 7.0e-156 555.1 625 50.6
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 9.1e-156 554.7 625 50.6
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 3.3e-153 546.2 630 49.2
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-151 540.8 594 52.5
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 9.8e-150 534.6 618 49.8
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 2.8e-149 533.1 637 48.0
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 4.9e-149 532.3 630 47.9
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.7e-147 526.6 628 48.9
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 4.5e-147 525.8 555 54.2
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 4.5e-147 525.8 634 47.5
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 7.8e-147 525.0 564 53.2
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.9e-141 506.5 619 47.8
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 7.0e-140 501.9 636 48.0
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.9e-137 493.8 634 47.3
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 5.6e-137 492.3 422 63.0
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.1e-132 478.0 589 47.9
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.7e-131 473.4 647 44.4
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 5.1e-130 469.2 408 63.0
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-129 467.2 439 58.3
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.1e-128 463.8 665 42.4
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.8e-127 460.7 439 58.1
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 6.4e-125 452.2 658 40.9
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.3e-122 443.7 627 42.3
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 5.1e-122 442.6 622 42.0
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 5.1e-122 442.6 667 40.6
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.4e-117 425.2 636 43.9
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 4.4e-110 402.9 505 46.1
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.5e-105 387.1 633 41.7
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-99 368.2 337 61.7
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-96 357.8 618 39.2
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.6e-96 357.8 618 38.8
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 2.6e-94 350.5 619 39.3
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 7.6e-94 349.0 619 38.1
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 8.4e-93 345.5 630 38.6
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.5e-91 340.1 613 39.3
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 6.0e-91 339.3 615 39.2
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.3e-90 338.2 630 37.3
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 7.4e-89 332.4 632 37.8
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.5e-86 323.2 401 48.4
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 9.3e-84 315.5 405 44.9
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.2e-80 304.3 615 37.2
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 6.9e-79 299.3 649 31.4
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.1e-75 286.2 622 36.8
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.7e-74 282.7 614 36.2
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.0e-69 266.5 616 34.4
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 2.0e-65 254.6 211 68.2
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-62 245.0 601 33.4
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-56 224.2 556 33.5
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 9.4e-52 209.1 653 29.9
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 6.3e-48 196.4 426 35.2
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.4e-47 194.5 243 49.4
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.8e-42 178.3 166 60.2
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-41 174.9 184 52.7
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-36 159.1 110 74.5
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.9e-36 158.3 119 70.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 9.5e-36 156.0 109 74.3
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 3.4e-33 147.5 143 54.5
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 7.8e-30 136.3 115 62.6
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 4.7e-27 127.1 90 72.2
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 3.1e-26 124.4 99 63.6
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 5.2e-26 123.6 158 47.5
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 2.0e-25 121.7 88 69.3
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 1.3e-24 119.0 83 69.9
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 3.2e-23 114.4 71 77.5
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-21 109.4 83 63.9
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-21 109.0 368 28.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 7.3e-20 103.2 83 61.4
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.2e-19 102.4 83 60.2
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-19 102.4 97 53.6
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 2.8e-19 101.3 150 42.7
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 8.1e-19 99.8 128 46.1
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 3.1e-18 97.8 341 25.8
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.0e-18 97.4 102 53.9
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.5e-17 95.5 51 88.2
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 9.8e-17 92.8 144 45.8
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-14 84.3 206 34.0
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-13 81.3 206 33.5
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 3.0e-13 81.3 206 33.5
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 5.1e-13 80.5 70 55.7
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 9.5e-12 76.3 140 37.1
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-08 65.5 68 55.9
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-08 65.5 81 51.9
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 2.2e-08 65.1 82 45.1
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 6.4e-08 63.5 93 37.6
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 3.2e-07 61.2 57 50.9
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 4.1e-07 60.8 61 50.8


User provided reference genes

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