Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.4e-168 595.5 319 100.0
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.1e-157 560.1 319 89.7
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 2.2e-137 492.7 320 80.0
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.1e-136 490.3 320 80.3
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 8.9e-131 470.7 321 78.5
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.3e-126 456.8 321 76.9
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.0e-126 455.7 318 74.2
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.5e-125 453.4 318 78.3
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.6e-124 449.9 320 74.1
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.6e-119 433.3 318 70.8
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.1e-117 427.2 311 77.8
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.4e-115 420.2 313 75.7
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 4.0e-115 418.7 318 70.8
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.3e-108 397.1 281 74.7
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 2.2e-97 359.8 295 59.7
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 7.1e-96 354.8 299 61.9
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-94 350.1 327 55.4
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.8e-94 350.1 319 57.4
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.1e-94 348.6 318 56.3
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.7e-94 347.8 299 57.9
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 7.4e-93 344.7 321 56.7
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.6e-92 343.6 295 59.0
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.6e-92 343.6 299 57.9
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.1e-92 343.2 318 58.5
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 6.2e-92 341.7 309 55.0
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.4e-91 339.7 309 54.7
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 4.1e-91 339.0 299 56.5
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 4.1e-91 339.0 295 58.3
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 4.1e-91 339.0 314 54.8
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.9e-91 338.2 318 57.9
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.2e-90 337.4 299 56.2
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.4e-90 335.9 327 56.9
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.7e-89 333.6 299 55.2
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 8.4e-89 331.3 296 61.1
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 1.1e-88 330.9 295 62.0
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 3.2e-88 329.3 318 52.2
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.2e-88 328.9 298 54.7
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 9.3e-88 327.8 320 53.8
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 9.3e-88 327.8 322 58.4
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.2e-87 327.4 344 56.7
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.0e-86 322.8 319 54.5
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.5e-85 319.7 304 54.3
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.3e-84 317.4 274 59.9
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 6.9e-83 311.6 311 53.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 6.9e-83 311.6 324 52.5
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 3.4e-82 309.3 286 56.6
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.0e-81 307.8 315 51.7
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 1.3e-81 307.4 341 50.7
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.9e-81 306.2 322 51.9
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 8.5e-81 304.7 313 54.3
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.4e-80 303.9 286 56.3
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 3.2e-80 302.8 297 53.5
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 5.5e-80 302.0 279 54.5
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 7.2e-80 301.6 263 58.2
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.2e-79 300.8 271 56.8
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.2e-79 300.8 317 50.5
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.6e-79 300.4 319 50.8
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 2.7e-79 299.7 309 53.4
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.7e-79 299.7 315 50.5
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 6.1e-79 298.5 302 52.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 6.1e-79 298.5 319 51.1
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 7.9e-79 298.1 300 50.3
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 5.1e-78 295.4 310 49.7
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 8.8e-78 294.7 282 53.9
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 8.8e-78 294.7 319 50.2
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.5e-77 293.9 301 50.8
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.5e-77 293.9 302 50.7
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.5e-77 293.9 313 49.5
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 4.3e-77 292.4 319 48.0
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 5.7e-77 292.0 296 51.0
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 7.4e-77 291.6 296 52.4
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.3e-76 290.8 300 50.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.7e-76 290.4 300 50.0
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.7e-76 290.4 301 49.5
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.2e-76 290.0 301 50.5
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 3.7e-76 289.3 300 49.3
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 3.7e-76 289.3 300 49.3
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 3.7e-76 289.3 300 49.3
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.8e-76 288.9 301 50.5
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 4.8e-76 288.9 260 58.1
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.3e-76 288.5 300 48.3
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 8.2e-76 288.1 301 49.8
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 8.2e-76 288.1 301 49.8
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 8.2e-76 288.1 315 54.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.4e-75 287.3 301 50.2
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.8e-75 287.0 314 49.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.8e-75 287.0 314 49.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.8e-75 287.0 296 51.4
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.1e-75 286.2 300 50.3
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 5.3e-75 285.4 301 49.8
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 5.3e-75 285.4 320 52.2
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 5.3e-75 285.4 316 48.7
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 6.9e-75 285.0 301 49.2
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 9.1e-75 284.6 301 49.5
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 9.1e-75 284.6 301 49.5
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.2e-74 284.3 299 50.8
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.5e-74 283.9 299 50.5
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 2.0e-74 283.5 312 48.4
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.0e-74 283.5 300 50.3
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 2.6e-74 283.1 301 49.8
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.6e-74 283.1 301 49.8
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.4e-74 282.7 302 49.7
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.7e-73 280.4 314 47.5
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.7e-73 280.4 314 47.5
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.7e-73 280.4 314 47.5
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.4e-72 277.3 314 46.5
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 4.2e-72 275.8 314 46.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.2e-71 274.2 304 47.4
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.1e-71 273.5 321 47.4
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 6.1e-71 271.9 298 49.3
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.8e-70 270.4 321 47.4
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.8e-70 270.4 368 44.3
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.3e-70 270.0 301 47.8
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.3e-70 270.0 319 46.1
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 3.0e-70 269.6 310 47.1
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.0e-70 269.6 322 46.3
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 5.1e-70 268.9 313 47.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 8.8e-70 268.1 316 47.2
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.0e-69 266.9 312 46.2
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 7.4e-69 265.0 319 47.0
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.7e-68 263.8 319 46.4
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 8.2e-68 261.5 319 46.7
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 8.2e-68 261.5 318 46.9
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.1e-67 259.2 258 51.6
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 4.5e-66 255.8 257 50.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.0e-65 254.6 258 50.8
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.2e-65 253.4 239 54.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 5.0e-65 252.3 302 45.4
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 4.7e-63 245.7 394 38.3
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.1e-59 234.6 303 43.9
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.6e-58 230.7 300 42.7
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.3e-57 227.6 317 42.0
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.2e-57 226.9 327 43.7
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.1e-56 224.6 316 40.8
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 9.4e-56 221.5 318 40.6
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.6e-55 220.7 219 56.2
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 4.1e-43 179.5 238 40.3
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 5.0e-41 172.6 164 53.0
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.3e-40 169.9 214 43.9
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 2.8e-39 166.8 170 52.4
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.8e-30 137.5 142 51.4
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 9.8e-29 131.7 169 46.2
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.3e-28 131.3 307 31.6
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 3.7e-28 129.8 309 29.4
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 8.6e-25 118.6 296 28.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.9e-24 117.5 126 45.2
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 5.6e-24 115.9 126 44.4
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 1.8e-22 110.9 86 68.6
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.3e-22 110.5 104 55.8
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.4e-21 106.7 115 49.6
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 5.8e-21 105.9 291 27.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.0e-17 95.1 91 54.9
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.0e-17 95.1 91 54.9
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.0e-17 95.1 87 54.0
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.5e-16 91.3 100 50.0
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 4.0e-14 83.2 74 51.4
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 4.0e-14 83.2 74 51.4
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 4.0e-14 83.2 74 51.4
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 7.6e-13 79.0 113 43.4
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 7.6e-13 79.0 76 48.7
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.7e-09 67.8 79 40.5
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 6.2e-07 59.3 29 93.1


User provided reference genes

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