Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1357.8 694 100.0
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1291.2 694 94.8
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1263.8 696 92.2
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 0.0e+00 1261.9 694 92.9
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1258.4 696 92.0
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1256.9 696 91.8
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 0.0e+00 1235.7 679 92.8
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1226.5 697 89.4
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1219.5 696 89.9
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 0.0e+00 1169.8 647 91.5
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1131.7 696 82.5
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1130.5 696 82.5
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1124.4 690 82.8
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1108.2 698 81.9
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1106.3 693 81.2
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1103.6 693 81.1
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1103.2 697 81.6
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1101.3 690 81.2
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1099.0 693 81.4
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1097.8 697 80.8
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1096.3 690 80.7
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 0.0e+00 1095.9 696 79.9
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1094.7 697 80.5
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 0.0e+00 1091.6 732 77.6
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 0.0e+00 1091.6 696 80.5
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1090.5 694 80.5
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1090.1 703 79.2
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1085.5 745 76.6
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1085.1 691 79.7
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 0.0e+00 1084.3 696 80.5
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 4.7e-312 1074.7 697 79.9
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 4.7e-312 1073.5 696 79.7
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 1.4e-311 1072.4 698 80.1
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.4e-311 1071.6 696 79.5
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.6e-310 1068.9 688 80.1
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 8.0e-310 1066.6 692 78.3
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 4.0e-309 1064.3 691 78.1
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 5.2e-309 1063.9 696 77.7
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 3.4e-308 1061.2 698 78.1
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.5e-308 1060.1 688 79.7
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 1.3e-307 1059.3 694 77.4
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 4.1e-306 1054.3 696 78.7
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 9.2e-306 1053.1 688 79.1
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 1.6e-305 1052.4 697 77.3
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.7e-305 1051.6 690 77.7
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 3.5e-305 1051.2 691 78.1
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 5.9e-305 1050.4 691 77.7
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 7.7e-305 1050.0 696 77.0
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 1.7e-304 1048.9 694 77.5
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 1.7e-304 1048.9 696 77.0
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 8.6e-304 1046.6 691 77.1
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 1.1e-303 1046.2 691 77.1
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 1.9e-303 1045.4 695 77.7
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 4.3e-303 1044.3 741 74.0
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 9.5e-303 1043.1 696 77.4
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.1e-302 1042.0 718 74.1
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 6.1e-302 1040.4 693 77.5
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 1.7e-296 1022.3 712 75.0
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 3.9e-296 1021.1 802 68.1
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 9.5e-295 1016.5 692 77.0
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 8.0e-294 1013.4 691 75.3
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.0e-293 1013.1 694 75.5
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 1.8e-293 1012.3 696 75.1
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 6.8e-293 1010.4 695 75.0
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 1.7e-291 1005.7 694 75.4
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 2.9e-291 1005.0 695 74.7
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 7.0e-290 1000.3 695 74.1
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 7.8e-289 996.9 690 74.8
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.3e-288 995.3 690 74.5
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 3.9e-288 994.6 693 74.0
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 5.0e-288 994.2 695 73.4
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 5.0e-288 994.2 692 75.0
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 5.6e-287 990.7 695 73.8
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 2.1e-286 988.8 695 73.2
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 2.8e-286 988.4 695 73.2
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 6.2e-286 987.3 696 73.6
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 8.1e-286 986.9 695 73.1
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 8.1e-286 986.9 695 73.1
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.4e-285 986.1 695 72.9
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.5e-284 982.6 693 73.9
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 2.7e-281 971.8 695 72.1
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 2.0e-276 955.7 691 71.8
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 2.2e-275 952.2 696 71.6
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 7.3e-271 937.2 1201 48.0
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 2.0e-268 929.1 700 68.7
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 5.8e-268 927.5 689 70.2
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 7.1e-266 920.6 688 69.8
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 4.5e-260 901.4 553 82.8
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 6.4e-251 870.9 774 62.9
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 7.4e-247 857.4 721 63.0
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.8e-238 828.9 723 59.6
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.2e-233 813.5 536 79.1
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 7.9e-233 810.8 581 73.5
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 4.1e-221 771.9 510 76.7
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.0e-216 757.3 468 81.8
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 2.3e-216 756.1 518 74.3
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 9.7e-207 724.2 641 59.3
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 3.7e-206 722.2 691 57.7
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 2.0e-188 663.3 420 79.8
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 1.6e-145 520.8 716 42.6
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 7.1e-141 505.4 707 42.0
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 2.2e-134 483.8 703 40.5
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.6e-127 460.3 692 44.4
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 5.7e-122 442.6 271 85.6
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.8e-121 440.3 692 44.2
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 3.0e-115 420.2 274 79.2
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 3.7e-113 413.3 474 49.8
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.1e-108 397.5 659 42.8
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.1e-104 383.6 232 81.0
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 5.9e-95 352.8 433 51.7
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.1e-93 348.6 247 72.9
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 3.1e-88 330.5 676 36.4
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 4.4e-82 310.1 222 73.4
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 3.0e-75 287.3 293 57.7
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 1.1e-69 268.9 205 72.7
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 4.4e-66 256.9 167 75.4
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 5.2e-59 233.4 143 86.0
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 5.2e-59 233.4 143 86.0
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 3.0e-54 217.6 125 93.6
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 8.9e-51 206.1 99 99.0
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 4.9e-33 147.1 115 61.7
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 1.2e-26 125.9 75 93.3
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 8.4e-25 119.8 84 65.5
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 1.1e-24 119.4 64 95.3
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 3.9e-22 110.9 204 40.2
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 1.3e-14 85.9 151 37.1


User provided reference genes

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