Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G089000 Glycine max HOM05D006398 ORTHO05D007983 4.5e-58 228.0 144 100.0
Lj2g0016631 Lotus japonicus HOM05D006398 ORTHO05D007983 2.3e-49 199.1 144 79.2
Lalb_Chr16g0380261 Lupinus albus HOM05D006398 ORTHO05D007983 2.2e-44 182.6 144 74.3
Glyma.01G155800 Glycine max HOM05D006398 ORTHO05D007983 1.1e-43 180.3 128 93.0
Ca_25041_v3 Cicer arietinum L. HOM05D006398 ORTHO05D007983 1.4e-43 179.9 144 68.8
Medtr5g025015 Medicago truncatula HOM05D006398 ORTHO05D007983 1.6e-42 176.4 144 68.1
VMungo1215G0575 Vigna mungo HOM05D006398 ORTHO05D007983 5.0e-41 171.4 139 83.5
TPR.G33762 Trifolium pratense HOM05D006398 ORTHO05D007983 1.1e-40 170.2 144 66.0
Phvul.002G119800 Phaseolus vulgaris HOM05D006398 ORTHO05D007983 3.6e-39 165.2 139 80.6
Psat2g147080 Pisum sativum HOM05D006398 ORTHO05D007983 1.3e-36 156.8 142 62.0
CiPaw.03G212200 Carya illinoinensis HOM05D006398 ORTHO05D007983 1.5e-32 143.3 146 68.5
Cfa007121 Carpinus fangiana HOM05D006398 ORTHO05D007983 8.1e-31 137.5 146 70.5
Prupe.7G188600 Prunus persica HOM05D006398 ORTHO05D007983 1.1e-30 137.1 142 56.3
COL.COLO4_15698 Corchorus olitorius HOM05D006398 ORTHO05D007983 4.0e-30 135.2 143 60.8
Cfa011161 Carpinus fangiana HOM05D006398 ORTHO05D007983 5.2e-30 134.8 144 61.8
Thecc.04G122700 Theobroma cacao HOM05D006398 ORTHO05D007983 6.8e-30 134.4 145 54.5
Lalb_Chr05g0215011 Lupinus albus HOM05D006398 ORTHO05D007983 2.6e-29 132.5 144 69.4
Duzib133G0235 Durio zibethinus HOM05D006398 ORTHO05D007983 9.9e-29 130.6 145 61.4
Gohir.A07G076575 Gossypium hirsutum HOM05D006398 ORTHO05D007983 9.9e-29 130.6 145 61.4
QL06p053503 Quercus lobata HOM05D006398 ORTHO05D007983 9.9e-29 130.6 145 62.8
Dinv24399 Davidia involucrata HOM05D006398 ORTHO05D007983 1.1e-27 127.1 143 50.3
Dinv28289 Davidia involucrata HOM05D006398 ORTHO05D007983 1.1e-27 127.1 143 50.3
Gorai.001G086400 Gossypium raimondii HOM05D006398 ORTHO05D007983 1.4e-27 126.7 142 61.3
Manes.02G117704 Manihot esculenta HOM05D006398 ORTHO05D007983 1.4e-27 126.7 145 51.0
Gohir.D07G081300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 3.2e-27 125.6 145 60.0
Dinv19113 Davidia involucrata HOM05D006398 ORTHO05D007983 5.4e-27 124.8 145 51.0
Manes.01G158600 Manihot esculenta HOM05D006398 ORTHO05D007983 9.2e-27 124.0 141 51.8
Atru.chr3.7 Acer truncatum HOM05D006398 ORTHO05D007983 1.6e-26 123.2 141 55.3
FAN23G0152 Fragaria x ananassa HOM05D006398 ORTHO05D007983 2.1e-26 122.9 142 50.0
RcHm_v2.0_Chr2g0096641 Rosa chinensis HOM05D006398 ORTHO05D007983 2.7e-26 122.5 142 62.0
FAN26G0304 Fragaria x ananassa HOM05D006398 ORTHO05D007983 3.5e-26 122.1 142 50.0
Gohir.A11G167300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 7.8e-26 120.9 141 60.3
Gorai.007G185900 Gossypium raimondii HOM05D006398 ORTHO05D007983 1.0e-25 120.6 144 59.0
FvH4_1g09810 Fragaria vesca HOM05D006398 ORTHO05D007983 1.3e-25 120.2 142 49.3
FAN19G1193 Fragaria x ananassa HOM05D006398 ORTHO05D007983 1.3e-25 120.2 142 49.3
Hma1.2p1_0085F.1_g044270 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 1.5e-24 116.7 142 49.3
TAR381G1497 Trochodendron aralioides HOM05D006398 ORTHO05D007983 1.5e-24 116.7 141 49.6
Actinidia28761 Actinidia chinensis HOM05D006398 ORTHO05D007983 3.3e-24 115.5 145 56.6
Gohir.D11G173600 Gossypium hirsutum HOM05D006398 ORTHO05D007983 4.3e-24 115.2 138 58.0
Eucgr.J02575 Eucalyptus grandis HOM05D006398 ORTHO05D007983 5.6e-24 114.8 144 60.4
PGR119G1180 Punica granatum HOM05D006398 ORTHO05D007983 7.3e-24 114.4 147 63.3
CSS0046434 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 9.6e-24 114.0 145 49.7
Ciclev10026700m.g Citrus clementina HOM05D006398 ORTHO05D007983 3.6e-23 112.1 142 58.5
CSS0002146 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 4.7e-23 111.7 145 49.0
CANSAT56G1034 Cannabis sativa HOM05D006398 ORTHO05D007983 6.2e-23 111.3 134 62.7
Nn6g31587 Nelumbo nucifera HOM05D006398 ORTHO05D007983 1.1e-22 110.5 143 48.3
Potri.011G146400 Populus trichocarpa HOM05D006398 ORTHO05D007983 1.8e-22 109.8 142 47.2
FAN28G0584 Fragaria x ananassa HOM05D006398 ORTHO05D007983 4.0e-22 108.6 142 50.0
PGR042G1229 Punica granatum HOM05D006398 ORTHO05D007983 1.5e-21 106.7 147 60.5
Sabra11G0131300 Salix brachista HOM05D006398 ORTHO05D007983 2.6e-21 105.9 141 44.7
MD15G1226600 Malus domestica HOM05D006398 ORTHO05D007983 3.4e-21 105.5 136 50.0
vmacro20410 Vaccinium macrocarpon HOM05D006398 ORTHO05D007983 3.4e-21 105.5 144 44.4
Aqoxy5G00947 Aquilegia oxysepala HOM05D006398 ORTHO05D007983 7.6e-21 104.4 146 52.1
TWI53G1768 Tripterygium wilfordii HOM05D006398 ORTHO05D007983 7.6e-21 104.4 140 56.4
MBI04_g11522_MAGBIO Magnolia biondii HOM05D006398 ORTHO05D007983 2.2e-20 102.8 140 45.0
Oeu000786.1 Olea europaea HOM05D006398 ORTHO05D007983 1.9e-19 99.8 142 52.8
TAR376G1029 Trochodendron aralioides HOM05D006398 ORTHO05D007983 1.9e-19 99.8 140 44.3
DCAR_014127 Daucus carota HOM05D006398 ORTHO05D007983 2.4e-19 99.4 140 46.4
Sabra16G0308300 Salix brachista HOM05D006398 ORTHO05D007983 3.2e-19 99.0 145 43.4
Lj4P245T44 Lonicera japonica HOM05D006398 ORTHO05D007983 4.2e-19 98.6 141 47.5
Nitab4.5_0012518g0010 Nicotiana tabacum HOM05D006398 ORTHO05D007983 9.3e-19 97.4 145 44.8
Haze_03650 Corylus avellana HOM05D000071 ORTHO05D007983 1.2e-18 97.1 101 76.2
Oeu024785.2 Olea europaea HOM05D006398 ORTHO05D007983 1.2e-18 97.1 144 44.4
Cfa000559 Carpinus fangiana HOM05D006398 ORTHO05D007983 2.7e-18 95.9 96 52.1
Nitab4.5_0011544g0020 Nicotiana tabacum HOM05D006398 ORTHO05D007983 7.8e-18 94.4 136 44.9
Cfa012756 Carpinus fangiana HOM05D006398 ORTHO05D007983 1.0e-17 94.0 101 68.3
TAR628G0945 Trochodendron aralioides HOM05D006398 ORTHO05D007983 5.1e-17 91.7 105 52.4
CsaV3_6G047960 Cucumis sativus L. HOM05D006398 ORTHO05D007983 6.6e-17 91.3 132 43.2
MSTRG.19082 Avicennia marina HOM05D006398 ORTHO05D007983 1.1e-16 90.5 141 44.0
CAN.G883.23 Capsicum annuum HOM05D006398 ORTHO05D007983 1.3e-15 87.0 144 52.8
Rhsim10G0190200 Rhododendron simsii HOM05D006398 ORTHO05D007983 2.1e-15 86.3 127 39.4
MELO3C007985.2 Cucumis melo HOM05D006398 ORTHO05D007983 2.8e-15 85.9 133 43.6
PSO017G7180 Papaver somniferum HOM05D006398 ORTHO05D007983 3.6e-15 85.5 140 41.4
Sed0016714 Sechium edule HOM05D006398 ORTHO05D007983 3.6e-15 85.5 113 59.3
PSO017G0885 Papaver somniferum HOM05D006398 ORTHO05D007983 4.8e-15 85.1 140 42.1
Peaxi162Scf00981g00021 Petunia axillaris HOM05D006398 ORTHO05D007983 6.2e-15 84.7 144 45.8
SalBow3G3387 Salvia bowleyana HOM05D006398 ORTHO05D007983 8.1e-15 84.3 136 41.2
Sopen02g017390 Solanum pennellii HOM05D006398 ORTHO05D007983 1.1e-14 84.0 144 41.0
ATR0605G223 Amborella trichopoda HOM05D006398 ORTHO05D007983 1.4e-14 83.6 145 50.3
arahy.Tifrunner.gnm1.ann1.GQ5KDA Arachis hypogaea HOM05D006398 ORTHO05D007983 1.4e-14 83.6 46 89.1
Solyc02g068290.2 Solanum lycopersicum HOM05D006398 ORTHO05D007983 1.4e-14 83.6 144 41.0
Sed0010545 Sechium edule HOM05D006398 ORTHO05D007983 1.8e-14 83.2 132 41.7
HPP92_018846 Vanilla planifolia HOM05D006398 ORTHO05D007983 3.1e-14 82.4 141 38.3
PGSC0003DMG400009426 Solanum tuberosum HOM05D006398 ORTHO05D007983 3.4e-13 79.0 144 39.6
Hma1.2p1_0353F.1_g133130 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 5.8e-13 78.2 140 37.1
HanXRQChr10g0316121 Helianthus annuus HOM05D006398 ORTHO05D007983 7.6e-13 77.8 135 41.5
ECA238G1438 Erigeron canadensis HOM05D006398 ORTHO05D007983 2.9e-12 75.9 140 41.4
Cpa.g.sc178.36 Carica papaya HOM05D006398 ORTHO05D007983 1.1e-11 73.9 104 43.3
MD02G1107400 Malus domestica HOM05D006398 ORTHO05D007983 1.4e-11 73.6 84 50.0
Migut.J00328 Erythranthe guttata HOM05D006398 ORTHO05D007983 2.4e-11 72.8 126 37.3
Sc03g0004180 Simmondsia chinensis HOM05D006398 ORTHO05D007983 2.4e-11 72.8 142 50.7
SGA_v2.0_scaffold126G33784 Striga asiatica HOM05D006398 ORTHO05D007983 2.1e-10 69.7 137 37.2
HPP92_018898 Vanilla planifolia HOM05D006398 ORTHO05D007983 1.3e-09 67.0 141 34.8
CDE06G2001 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 1.8e-09 66.6 139 36.0
CDE04G3216 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 3.9e-09 65.5 149 37.6
SHI11157 Sapria himalayana HOM05D006398 ORTHO05D007983 6.7e-09 64.7 112 41.1
EL10Ac5g11754 Beta vulgaris HOM05D006398 ORTHO05D007983 8.7e-09 64.3 143 34.3
Ah.02g115220 Amaranthus hybridus HOM05D006398 ORTHO05D007983 2.5e-08 62.8 146 33.6
SEGI_02084 Sequoiadendron giganteum HOM05D006398 ORTHO05D007983 2.5e-08 62.8 135 39.3
Lsat_1_v5_gn_2_72860 Lactuca sativa HOM05D006398 ORTHO05D007983 3.3e-08 62.4 65 47.7
Aa31LG4G7260 Aethionema arabicum HOM05D000087 ORTHO05D002585 4.3e-08 62.0 62 79.0
Carub.0005s1788 Capsella rubella HOM05D006398 ORTHO05D007983 4.3e-08 62.0 138 50.0
THA.LOC109117268 Tarenaya hassleriana HOM05D006398 ORTHO05D007983 4.8e-07 58.5 142 48.6
AT3G51500 Arabidopsis thaliana HOM05D006398 ORTHO05D007983 6.2e-07 58.2 138 51.4
Sp5g10740 Schrenkiella parvula HOM05D006398 ORTHO05D007983 6.2e-07 58.2 138 48.6
Zm00001eb236520 Zea mays HOM05D006398 ORTHO05D007983 6.2e-07 58.2 150 45.3
Thhalv10010838m.g Eutrema salsugineum HOM05D006398 ORTHO05D007983 1.4e-06 57.0 138 47.1
AL5G31940 Arabidopsis lyrata HOM05D006398 ORTHO05D007983 4.0e-06 55.5 138 48.6


User provided reference genes

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