Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 0.0e+00 1740.7 888 100.0
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 0.0e+00 1605.5 892 92.0
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 0.0e+00 1520.8 895 86.9
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 0.0e+00 1460.7 879 85.2
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 0.0e+00 1276.2 892 75.7
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 0.0e+00 1209.9 900 71.6
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 0.0e+00 1209.9 900 71.6
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 0.0e+00 1184.1 897 71.6
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 0.0e+00 1171.4 899 71.0
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 0.0e+00 1156.0 902 71.5
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 0.0e+00 1142.5 900 69.6
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 0.0e+00 1093.6 900 68.1
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.2e-305 1053.1 898 64.9
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 1.3e-288 996.5 900 61.0
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 1.2e-286 989.9 868 63.4
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 2.5e-279 965.7 897 60.1
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 4.1e-274 948.3 905 58.7
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 5.5e-271 937.9 903 57.5
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 9.4e-271 937.2 900 57.8
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.4e-269 933.3 901 57.9
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 3.3e-268 928.7 886 58.8
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 7.4e-268 927.5 901 58.0
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.4e-265 918.7 897 57.2
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 3.4e-265 918.7 898 59.7
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 5.0e-264 914.8 900 57.3
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 8.5e-264 914.1 903 58.9
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.5e-263 912.5 900 57.3
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 3.2e-263 912.1 908 56.7
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.7e-262 909.1 900 57.2
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 3.6e-262 908.7 902 56.0
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 7.4e-260 901.0 887 57.7
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 3.7e-259 898.7 901 56.8
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 6.3e-259 897.9 900 56.0
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 5.3e-258 894.8 908 56.2
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 5.9e-257 891.3 688 70.3
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 8.5e-256 887.5 903 55.3
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.5e-255 886.7 908 55.0
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.5e-255 886.7 903 55.1
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 7.2e-255 884.4 860 57.8
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.1e-254 882.9 903 54.9
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.0e-253 880.6 902 54.3
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 4.4e-252 875.2 903 54.0
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.5e-249 865.5 900 55.1
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 7.5e-244 847.8 906 53.3
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 1.4e-242 843.6 900 53.4
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 1.2e-241 840.5 907 53.4
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 2.7e-241 839.3 895 54.4
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.0e-240 837.4 899 52.2
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 3.6e-238 828.9 905 54.1
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 3.0e-237 825.9 879 54.0
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 2.0e-236 823.2 992 49.8
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 5.7e-236 821.6 900 54.7
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 5.7e-236 821.6 903 52.6
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 7.0e-234 814.7 880 56.5
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 7.8e-233 811.2 900 52.4
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.2e-227 793.1 900 51.2
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 7.8e-225 784.6 906 51.2
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 5.0e-224 781.9 851 54.3
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 6.6e-224 781.6 834 55.9
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 2.8e-222 776.2 898 48.8
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 6.2e-222 775.0 891 51.7
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 3.5e-217 759.2 900 50.8
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 2.2e-211 740.0 857 51.5
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.9e-210 736.9 904 47.7
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.2e-209 734.2 862 49.4
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 2.5e-207 726.5 866 49.9
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.7e-206 722.2 904 47.1
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.0e-205 719.2 900 46.9
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 5.2e-205 718.8 884 48.5
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 2.6e-204 716.5 901 46.7
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.9e-202 710.3 915 46.6
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 3.2e-202 709.5 887 47.0
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 4.1e-202 709.1 903 47.7
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 2.7e-201 706.4 867 49.1
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 4.9e-195 685.6 899 48.2
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 5.1e-192 675.6 912 45.4
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 4.0e-189 666.0 903 46.2
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.2e-188 664.5 964 43.9
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 3.5e-185 652.9 877 46.2
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.0e-185 652.1 904 44.5
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.0e-184 649.8 904 44.4
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 1.7e-179 634.0 900 46.0
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 1.1e-178 631.3 635 56.1
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 4.3e-175 619.4 975 40.5
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 7.4e-175 618.6 957 41.5
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 1.8e-173 614.0 940 43.3
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 4.0e-173 612.8 887 42.6
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 5.3e-173 612.5 960 40.8
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 2.0e-172 610.5 781 49.3
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 3.4e-172 609.8 940 42.9
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 7.6e-172 608.6 851 44.3
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 7.9e-169 598.6 817 44.4
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 4.3e-167 592.8 906 41.8
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 5.0e-163 579.3 887 44.5
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.1e-162 578.2 895 40.8
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 3.6e-161 573.2 902 42.5
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.6e-161 572.8 832 43.0
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.3e-155 554.7 906 40.8
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.2e-155 553.9 830 42.4
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 6.5e-155 552.4 852 42.5
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 3.2e-154 550.1 882 40.9
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 6.3e-150 535.8 876 41.3
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 6.9e-149 532.3 911 39.3
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 2.3e-144 517.3 919 41.1
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 2.3e-144 517.3 922 41.4
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 1.5e-143 514.6 918 41.7
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 1.8e-141 507.7 889 39.7
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.5e-140 503.4 721 45.8
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 4.5e-140 503.1 920 41.1
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 1.0e-139 501.9 924 40.6
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 2.2e-139 500.7 903 39.9
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 2.2e-139 500.7 903 39.9
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 5.0e-139 499.6 906 40.2
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 1.9e-138 497.7 912 40.5
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 1.9e-138 497.7 912 40.5
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 3.6e-137 493.4 920 40.1
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.6e-137 493.4 693 46.8
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 1.0e-136 491.9 913 40.2
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.1e-122 445.3 914 37.7
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 2.8e-121 440.7 855 38.0
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 4.0e-120 436.8 856 36.6
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 2.6e-119 434.1 919 36.6
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 1.2e-116 425.2 936 36.6
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.9e-114 417.9 623 43.8
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 2.5e-98 364.4 941 32.0
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 3.3e-98 364.0 886 34.9
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 5.8e-87 326.6 943 31.2
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 7.1e-85 319.7 923 31.0
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 9.6e-82 309.3 214 74.8
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.6e-73 282.0 535 40.0
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 4.9e-70 270.4 239 65.7
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 5.1e-67 260.4 398 39.9
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 1.6e-65 255.4 618 36.1
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 8.2e-49 199.9 941 27.1
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.6e-44 185.7 180 56.7
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 6.9e-40 170.2 137 65.7
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.5e-37 160.6 385 35.3
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.1e-34 152.9 332 33.4
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 5.3e-32 144.1 228 41.2
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 8.5e-30 136.7 207 42.0
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.2e-27 127.5 370 29.5
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.0e-26 125.6 612 27.9
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 6.3e-25 120.6 484 27.3
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 1.5e-18 99.4 1218 21.3
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 1.8e-16 92.4 161 41.6
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 7.0e-16 90.5 446 25.6
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 5.9e-15 87.4 500 25.0
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 3.8e-14 84.7 161 37.9
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 2.5e-13 82.0 1047 22.0
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 3.7e-09 68.2 792 22.9
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 4.8e-09 67.8 110 42.7
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 1.4e-08 66.2 968 20.7
PGR044G1424 Punica granatum HOM05D002769 ORTHO05D003160 1.8e-08 65.9 595 22.4
Lsat_1_v5_gn_8_90361 Lactuca sativa HOM05D002769 ORTHO05D003160 4.1e-08 64.7 556 23.6
QL09p043841 Quercus lobata HOM05D002769 ORTHO05D003160 1.2e-07 63.2 1024 20.0
Mapoly0001s0174 Marchantia polymorpha HOM05D002515 ORTHO05D002722 1.6e-07 62.8 287 25.8
MSTRG.17533 Avicennia marina HOM05D002769 ORTHO05D003160 4.5e-07 61.2 685 22.8
Pp3c17_4110 Physcomitrium patens HOM05D031362 ORTHO05D005796 4.5e-07 61.2 215 28.4
CSS0005557 Camellia sinensis var. sinensis HOM05D002769 ORTHO05D003160 5.9e-07 60.8 107 33.6
Pp3c9_5030 Physcomitrium patens HOM05D031362 ORTHO05D002722 5.9e-07 60.8 204 32.4
Cfa002513 Carpinus fangiana HOM05D002769 ORTHO05D003160 7.7e-07 60.5 599 24.7
Rhsim13G0041700 Rhododendron simsii HOM05D002769 ORTHO05D003160 2.3e-06 58.9 107 34.6
Dinv31022 Davidia involucrata HOM05D033086 ORTHO05D005796 2.9e-06 58.5 73 43.8
Dinv31080 Davidia involucrata HOM05D033086 ORTHO05D005796 2.9e-06 58.5 73 43.8
Manes.12G040100 Manihot esculenta HOM05D002769 ORTHO05D003160 2.9e-06 58.5 773 22.5
vmacro02723 Vaccinium macrocarpon HOM05D002769 ORTHO05D003160 2.9e-06 58.5 107 34.6
PSO832G1375 Papaver somniferum HOM05D002769 ORTHO05D003160 3.8e-06 58.2 829 23.5
Sabra02G0192800 Salix brachista HOM05D002769 ORTHO05D003160 6.6e-06 57.4 128 30.5
ATR0787G113 Amborella trichopoda HOM05D002769 ORTHO05D003160 8.6e-06 57.0 109 33.0


User provided reference genes

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