Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.7e-91 339.3 177 100.0
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 3.6e-81 305.1 177 92.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 8.3e-70 267.3 177 79.7
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.2e-62 242.7 175 70.9
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 3.0e-59 232.3 177 68.9
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 1.2e-57 226.9 176 69.9
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 6.2e-57 224.6 178 69.7
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 8.1e-57 224.2 177 67.2
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 2.6e-55 219.2 177 68.9
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 7.6e-55 217.6 177 65.5
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 7.6e-55 217.6 177 65.5
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 2.7e-52 209.1 169 69.2
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 2.3e-51 206.1 177 65.0
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 4.3e-50 201.8 172 65.1
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 9.6e-50 200.7 178 63.5
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.2e-47 193.7 178 60.7
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 5.4e-45 184.9 152 67.8
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 9.3e-45 184.1 165 61.2
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.2e-44 183.7 171 59.1
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 3.5e-44 182.2 171 59.1
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.0e-43 180.6 176 56.2
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.0e-43 180.6 176 56.2
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.3e-43 180.3 173 57.8
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.9e-43 178.7 178 56.2
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 5.1e-43 178.3 174 56.3
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.7e-43 177.6 175 55.4
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.9e-42 176.4 178 55.6
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 7.3e-42 174.5 185 55.1
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.1e-41 172.9 173 55.5
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.8e-41 172.6 175 53.7
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 4.8e-41 171.8 178 53.9
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 8.1e-41 171.0 173 54.9
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 8.1e-41 171.0 172 57.0
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.1e-41 171.0 175 53.7
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 8.1e-41 171.0 174 55.2
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.4e-40 170.2 175 54.3
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.8e-40 169.9 172 54.1
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.8e-40 169.9 173 56.6
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.4e-40 169.5 164 56.1
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 3.1e-40 169.1 174 54.0
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 4.0e-40 168.7 174 53.4
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 4.0e-40 168.7 174 54.0
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 6.9e-40 167.9 174 53.4
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 9.0e-40 167.5 175 53.1
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 2.6e-39 166.0 156 60.3
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.4e-39 165.6 174 52.3
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 4.4e-39 165.2 179 55.9
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 5.8e-39 164.9 166 54.2
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 5.8e-39 164.9 164 54.3
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 9.9e-39 164.1 173 51.4
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.9e-38 162.5 172 51.2
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 3.8e-38 162.2 148 61.5
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.8e-38 162.2 171 53.8
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.4e-38 161.0 178 50.6
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 8.4e-38 161.0 169 53.3
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.1e-37 160.6 178 51.7
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.9e-37 159.8 175 50.9
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 2.4e-37 159.5 175 50.9
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.2e-37 159.1 167 55.7
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 3.2e-37 159.1 172 52.3
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 4.2e-37 158.7 175 52.0
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 4.2e-37 158.7 170 52.4
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 4.2e-37 158.7 164 53.0
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 5.4e-37 158.3 175 51.4
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 7.1e-37 157.9 157 58.6
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 7.1e-37 157.9 157 58.6
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 7.1e-37 157.9 175 50.9
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 9.3e-37 157.5 168 54.8
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.6e-36 156.8 172 51.2
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 2.1e-36 156.4 146 61.6
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 3.5e-36 155.6 174 49.4
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 4.6e-36 155.2 162 54.3
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 7.9e-36 154.5 173 49.1
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 7.9e-36 154.5 173 49.1
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.3e-35 153.7 175 50.9
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.3e-35 153.7 175 50.9
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.3e-35 153.7 177 55.4
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 2.3e-35 152.9 175 49.7
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 8.7e-35 151.0 176 48.9
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 8.7e-35 151.0 176 48.9
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.3e-34 149.1 165 50.9
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 9.6e-34 147.5 168 48.8
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.3e-33 147.1 169 49.7
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 1.6e-33 146.7 200 45.5
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 2.1e-33 146.4 144 54.9
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 2.1e-33 146.4 113 73.5
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 3.6e-33 145.6 155 54.2
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 4.8e-33 145.2 161 49.7
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 6.2e-33 144.8 176 48.3
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.2e-33 144.8 133 56.4
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 6.2e-33 144.8 154 53.9
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 8.1e-33 144.4 150 55.3
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.1e-32 144.1 167 49.1
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.4e-32 143.7 157 52.9
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 1.8e-32 143.3 180 48.3
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.8e-32 143.3 201 43.8
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 2.4e-32 142.9 136 61.0
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 3.1e-32 142.5 133 61.7
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.5e-31 140.2 144 54.2
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.5e-31 140.2 139 59.7
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 1.5e-31 140.2 165 47.3
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.5e-31 140.2 162 49.4
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 7.6e-31 137.9 138 54.3
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 7.6e-31 137.9 162 45.7
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 7.6e-31 137.9 162 46.9
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.2e-30 136.3 223 39.0
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 2.9e-30 136.0 129 55.8
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 6.4e-30 134.8 146 49.3
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.4e-30 134.8 215 40.0
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 8.4e-30 134.4 165 45.5
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 2.4e-29 132.9 162 49.4
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.4e-29 132.9 223 39.5
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.2e-29 132.5 161 49.7
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.2e-29 132.5 154 50.0
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 7.1e-29 131.3 133 59.4
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 7.1e-29 131.3 162 44.4
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 7.9e-28 127.9 177 46.9
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.0e-27 127.5 144 50.7
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 2.3e-27 126.3 176 43.2
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 2.5e-26 122.9 134 52.2
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 9.6e-26 120.9 150 48.7
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 1.3e-25 120.6 173 41.0
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 8.1e-25 117.9 177 40.7
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 5.3e-24 115.2 127 49.6
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 5.8e-23 111.7 98 61.2
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.0e-22 110.9 113 59.3
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 6.5e-22 108.2 151 46.4
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 8.4e-22 107.8 93 64.5
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 7.1e-21 104.8 170 40.0
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.1e-20 103.2 158 40.5
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 6.0e-20 101.7 170 36.5
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.3e-19 100.5 89 57.3
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.9e-18 96.7 106 56.6
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.5e-18 96.3 110 48.2
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 9.6e-18 94.4 72 58.3
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 2.1e-17 93.2 90 52.2
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 8.2e-17 91.3 174 37.4
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.1e-16 90.9 85 61.2
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 6.9e-16 88.2 87 59.8
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 9.0e-16 87.8 85 58.8
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 9.0e-16 87.8 75 49.3
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 4.5e-15 85.5 88 59.1
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 9.3e-13 77.8 112 46.4
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.3e-11 73.2 85 51.8
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 1.5e-10 70.5 170 28.8
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.5e-10 69.7 139 38.8
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.3e-09 67.4 161 29.8
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 4.8e-09 65.5 54 64.8
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 6.3e-09 65.1 62 62.9
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 6.3e-09 65.1 50 68.0
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.0e-08 61.2 49 67.3


User provided reference genes

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