Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G085200 Glycine max HOM05D007916 ORTHO05D010074 2.1e-98 362.5 196 100.0
Phvul.002G115700 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 1.7e-79 299.7 196 75.0
Lj2g0002075 Lotus japonicus HOM05D007916 ORTHO05D010074 4.0e-73 278.5 196 69.9
Lalb_Chr09g0321231 Lupinus albus HOM05D007916 ORTHO05D010074 5.6e-67 258.1 196 67.3
Glyma.09G198900 Glycine max HOM05D007916 ORTHO05D010074 1.8e-65 253.1 197 67.5
Medtr8g073850 Medicago truncatula HOM05D007916 ORTHO05D010074 5.2e-65 251.5 196 69.9
Lj2g0011068 Lotus japonicus HOM05D007916 ORTHO05D010074 1.5e-64 250.0 196 66.8
Ca_22424_v3 Cicer arietinum L. HOM05D007916 ORTHO05D010074 3.4e-64 248.8 196 62.8
Medtr8g073770 Medicago truncatula HOM05D007916 ORTHO05D010074 9.9e-64 247.3 196 69.4
Phvul.003G269500 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 5.4e-62 241.5 193 63.7
Psat4g104200 Pisum sativum HOM05D007916 ORTHO05D010074 3.5e-61 238.8 196 65.8
TPR.G18290 Trifolium pratense HOM05D007916 ORTHO05D010074 7.8e-61 237.7 153 73.2
MD02G1118100 Malus domestica HOM05D007916 ORTHO05D010074 3.0e-60 235.7 153 72.5
VMungo0251G0273 Vigna mungo HOM05D007916 ORTHO05D010074 8.6e-60 234.2 191 61.8
Prupe.7G181300 Prunus persica HOM05D007916 ORTHO05D010074 1.9e-59 233.0 153 72.5
Cfa007071 Carpinus fangiana HOM05D007916 ORTHO05D010074 3.3e-59 232.3 188 64.4
Cfa021284 Carpinus fangiana HOM05D007916 ORTHO05D010074 3.3e-59 232.3 188 64.4
Manes.02G113500 Manihot esculenta HOM05D007916 ORTHO05D010074 3.3e-59 232.3 193 62.7
CiPaw.08G181000 Carya illinoinensis HOM05D007916 ORTHO05D010074 5.6e-59 231.5 195 69.2
COL.COLO4_22545 Corchorus olitorius HOM05D007916 ORTHO05D010074 7.3e-59 231.1 196 61.2
QL06p052846 Quercus lobata HOM05D007916 ORTHO05D010074 7.3e-59 231.1 195 67.2
Thecc.01G006300 Theobroma cacao HOM05D007916 ORTHO05D010074 7.3e-59 231.1 196 62.2
Manes.17G004000 Manihot esculenta HOM05D007916 ORTHO05D010074 1.2e-58 230.3 193 62.7
Manes.01G154600 Manihot esculenta HOM05D007916 ORTHO05D010074 1.6e-58 229.9 193 62.7
PGR102G1177 Punica granatum HOM05D007916 ORTHO05D010074 4.7e-58 228.4 192 61.5
arahy.Tifrunner.gnm1.ann1.B3G9N7 Arachis hypogaea HOM05D007916 ORTHO05D010074 6.2e-58 228.0 147 70.7
arahy.Tifrunner.gnm1.ann1.IBR8Q2 Arachis hypogaea HOM05D007916 ORTHO05D010074 6.2e-58 228.0 147 70.7
FAN28G0654 Fragaria x ananassa HOM05D007916 ORTHO05D010074 1.1e-57 227.3 153 71.9
FvH4_1g10500 Fragaria vesca HOM05D007916 ORTHO05D010074 2.4e-57 226.1 153 71.2
FAN19G0206 Fragaria x ananassa HOM05D007916 ORTHO05D010074 2.4e-57 226.1 153 71.2
FAN26G2729 Fragaria x ananassa HOM05D007916 ORTHO05D010074 2.4e-57 226.1 153 71.2
FAN26G3374 Fragaria x ananassa HOM05D007916 ORTHO05D010074 2.4e-57 226.1 153 71.2
Nn5g30966 Nelumbo nucifera HOM05D007916 ORTHO05D010074 3.1e-57 225.7 152 70.4
Potri.005G100700 Populus trichocarpa HOM05D007916 ORTHO05D010074 3.1e-57 225.7 190 62.1
Duzib264G1152 Durio zibethinus HOM05D007916 ORTHO05D010074 4.0e-57 225.3 191 62.3
Hma1.2p1_0085F.1_g044830 Hydrangea macrophylla HOM05D007916 ORTHO05D010074 6.8e-57 224.6 190 63.7
Dinv40180 Davidia involucrata HOM05D000046 ORTHO05D000195 8.9e-57 224.2 170 69.4
MD02G1118400 Malus domestica HOM05D007916 ORTHO05D010074 9.9e-56 220.7 153 67.3
CANSAT25G0415 Cannabis sativa HOM05D007916 ORTHO05D010074 1.7e-55 219.9 193 64.8
RcHm_v2.0_Chr2g0097361 Rosa chinensis HOM05D007916 ORTHO05D010074 2.9e-55 219.2 153 69.3
CAN.G1238.3 Capsicum annuum HOM05D007916 ORTHO05D010074 1.4e-54 216.9 147 69.4
HanXRQChr14g0442461 Helianthus annuus HOM05D007916 ORTHO05D010074 1.9e-54 216.5 176 61.4
PGSC0003DMG403001521 Solanum tuberosum HOM05D007916 ORTHO05D010074 1.9e-54 216.5 147 70.7
ClCG10G000210 Citrullus lanatus HOM05D007916 ORTHO05D010074 4.2e-54 215.3 147 68.7
TAR381G0850 Trochodendron aralioides HOM05D007916 ORTHO05D010074 7.1e-54 214.5 193 62.2
Aqoxy6G01679 Aquilegia oxysepala HOM05D007916 ORTHO05D010074 9.2e-54 214.2 197 60.9
Sopen02g027500 Solanum pennellii HOM05D007916 ORTHO05D010074 9.2e-54 214.2 190 62.1
MELO3C013719.2 Cucumis melo HOM05D007916 ORTHO05D010074 2.1e-53 213.0 147 68.0
Lsat_1_v5_gn_2_73460 Lactuca sativa HOM05D007916 ORTHO05D010074 2.1e-53 213.0 188 63.3
MBI08_g04809_MAGBIO Magnolia biondii HOM05D007916 ORTHO05D010074 4.6e-53 211.8 151 66.9
Sabra05G0083300 Salix brachista HOM05D007916 ORTHO05D010074 6.0e-53 211.5 152 67.1
Solyc02g082740.1 Solanum lycopersicum HOM05D007916 ORTHO05D010074 7.8e-53 211.1 190 61.6
Ah.08g211140 Amaranthus hybridus HOM05D007916 ORTHO05D010074 1.9e-51 206.5 149 69.8
HanXRQChr14g0442451 Helianthus annuus HOM05D007916 ORTHO05D010074 3.3e-51 205.7 190 61.6
VMungo1215G2711 Vigna mungo HOM05D007916 ORTHO05D010074 4.7e-50 201.8 189 56.6
CSS0010065 Camellia sinensis var. sinensis HOM05D007916 ORTHO05D010074 6.2e-50 201.4 147 64.6
AUR62040166 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.4e-48 195.7 146 65.1
ATR0661G436 Amborella trichopoda HOM05D007916 ORTHO05D010074 9.9e-48 194.1 178 55.1
AUR62037915 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.4e-46 189.5 146 62.3
Zm00001eb145860 Zea mays HOM05D007916 ORTHO05D010074 2.4e-46 189.5 147 57.8
Os01g0879200 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 6.2e-42 174.9 180 48.3
Sabra05G0083200 Salix brachista HOM05D007916 ORTHO05D010074 2.0e-40 169.9 190 50.5
Potri.005G100600 Populus trichocarpa HOM05D007916 ORTHO05D010074 2.6e-40 169.5 147 58.5
EL10Ac1g00145 Beta vulgaris HOM05D007916 ORTHO05D010074 1.6e-37 160.2 150 53.3
EL10Ac4g07997 Beta vulgaris HOM05D007916 ORTHO05D010074 2.3e-36 156.4 190 45.3
AUR62029252 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.3e-35 152.5 147 48.3
AUR62034214 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.3e-35 152.5 147 47.6
Lj4P234T30 Lonicera japonica HOM05D007916 ORTHO05D010074 4.3e-35 152.1 101 67.3
AUR62034212 Chenopodium quinoa HOM05D007916 ORTHO05D010074 5.6e-35 151.8 147 47.6
Ah.05g178650 Amaranthus hybridus HOM05D007916 ORTHO05D010074 1.6e-34 150.2 145 49.0
AUR62029249 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.1e-33 147.5 148 48.0
Os01g0879300 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 8.4e-31 137.9 160 45.6
SMO143G0023 Selaginella moellendorffii HOM05D007916 ORTHO05D010074 2.5e-19 99.8 144 31.9
AUR62014631 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.3e-19 99.4 115 41.7
Zm00001eb051440 Zea mays HOM05D007916 ORTHO05D010074 1.6e-13 80.5 124 34.7
AUR62029251 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.9e-12 75.9 93 40.9
QL08p032297 Quercus lobata HOM05D000180 ORTHO05D000099 1.3e-10 70.9 107 39.3
Ah.09g237060 Amaranthus hybridus HOM05D007916 ORTHO05D010074 1.8e-09 67.0 88 38.6
Zm00001eb212920 Zea mays HOM05D007916 ORTHO05D010074 1.8e-09 67.0 116 31.9
Phvul.001G145700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 2.4e-09 66.6 143 35.0
Prupe.3G215600 Prunus persica HOM05D000180 ORTHO05D000099 4.1e-09 65.9 140 30.7
Haze_12825 Corylus avellana HOM05D000180 ORTHO05D000099 6.9e-09 65.1 118 34.7
SMO304G0105 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 2.0e-08 63.5 139 31.7
Cfa014363 Carpinus fangiana HOM05D000180 ORTHO05D000099 2.2e-07 60.1 107 33.6
Lj3P831T27 Lonicera japonica HOM05D000180 ORTHO05D000099 2.2e-07 60.1 146 30.1
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 2.2e-07 60.1 140 27.9
TPR.G13355 Trifolium pratense HOM05D000180 ORTHO05D000099 2.2e-07 60.1 126 35.7
MBI13_g16301_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 6.5e-07 58.5 119 33.6
FAN14G5554 Fragaria x ananassa HOM05D000180 ORTHO05D000099 8.5e-07 58.2 87 39.1
Manes.15G004300 Manihot esculenta HOM05D000180 ORTHO05D000099 8.5e-07 58.2 125 31.2
Prupe.3G215500 Prunus persica HOM05D000180 ORTHO05D000099 8.5e-07 58.2 172 25.6
PGR031G0578 Punica granatum HOM05D001508 ORTHO05D001381 8.5e-07 58.2 117 30.8
Rhsim06G0164000 Rhododendron simsii HOM05D000180 ORTHO05D000099 8.5e-07 58.2 104 36.5
TWI79G0050 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 8.5e-07 58.2 141 29.1
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.1e-06 57.8 88 37.5
Gohir.A10G062800 Gossypium hirsutum HOM05D000180 ORTHO05D000099 1.1e-06 57.8 149 27.5
Os11g0179700 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 1.1e-06 57.8 115 29.6
SEGI_04943 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 1.1e-06 57.8 140 27.9
Aa31LG10G12800 Aethionema arabicum HOM05D000180 ORTHO05D000099 1.4e-06 57.4 146 27.4
Haze_12834 Corylus avellana HOM05D000180 ORTHO05D000099 1.4e-06 57.4 102 33.3
Haze_12837 Corylus avellana HOM05D000180 ORTHO05D000099 1.4e-06 57.4 102 33.3
Glyma.03G147800 Glycine max HOM05D000180 ORTHO05D000099 1.4e-06 57.4 127 32.3
Prupe.3G215100 Prunus persica HOM05D000180 ORTHO05D000099 1.4e-06 57.4 110 32.7
QL08p032410 Quercus lobata HOM05D000180 ORTHO05D000099 1.4e-06 57.4 107 32.7
GSVIVG01025394001 Vitis vinifera HOM05D000180 ORTHO05D000099 1.4e-06 57.4 124 28.2
Ca_19514_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 1.9e-06 57.0 130 28.5
Dinv05410 Davidia involucrata HOM05D000180 ORTHO05D000099 1.9e-06 57.0 107 33.6
Eucgr.A02481 Eucalyptus grandis HOM05D000180 ORTHO05D000099 1.9e-06 57.0 117 33.3
Lsat_1_v5_gn_6_18101 Lactuca sativa HOM05D000180 ORTHO05D000099 1.9e-06 57.0 142 27.5
QL08p021396 Quercus lobata HOM05D000180 ORTHO05D000099 1.9e-06 57.0 102 33.3
TPR.G13359 Trifolium pratense HOM05D000180 ORTHO05D000099 1.9e-06 57.0 128 30.5
Cc07_g19920 Coffea canephora HOM05D001508 ORTHO05D001381 2.5e-06 56.6 137 28.5
COL.COLO4_30590 Corchorus olitorius HOM05D000180 ORTHO05D000099 2.5e-06 56.6 112 33.0
DCAR_008340 Daucus carota HOM05D000180 ORTHO05D000099 2.5e-06 56.6 126 31.7
Gohir.D01G003000 Gossypium hirsutum HOM05D000018 ORTHO05D001172 2.5e-06 56.6 123 31.7
Lj8C126T7 Lonicera japonica HOM05D000180 ORTHO05D000099 2.5e-06 56.6 108 33.3
QL10p054545 Quercus lobata HOM05D000180 ORTHO05D000099 2.5e-06 56.6 101 30.7
TPR.G13368 Trifolium pratense HOM05D000180 ORTHO05D000099 2.5e-06 56.6 128 31.2
Aa31LG7G6900 Aethionema arabicum HOM05D000180 ORTHO05D000099 3.2e-06 56.2 123 29.3
Dinv05412 Davidia involucrata HOM05D000180 ORTHO05D000099 3.2e-06 56.2 107 33.6
Eucgr.A01115 Eucalyptus grandis HOM05D000180 ORTHO05D000099 3.2e-06 56.2 93 35.5
FvH4_6g42510 Fragaria vesca HOM05D000180 ORTHO05D000099 3.2e-06 56.2 87 37.9
TAR629G2919 Trochodendron aralioides HOM05D000180 ORTHO05D000099 3.2e-06 56.2 128 31.2
Nn7g35945 Nelumbo nucifera HOM05D000180 ORTHO05D000099 4.2e-06 55.8 149 28.2
Nitab4.5_0001601g0080 Nicotiana tabacum HOM05D000180 ORTHO05D000099 4.2e-06 55.8 93 34.4
Oeu001618.1 Olea europaea HOM05D000180 ORTHO05D000099 4.2e-06 55.8 91 34.1
PSO724G0087 Papaver somniferum HOM05D000180 ORTHO05D000099 4.2e-06 55.8 124 28.2
TAR629G0736 Trochodendron aralioides HOM05D000180 ORTHO05D000099 4.2e-06 55.8 106 34.9
TAR629G1977 Trochodendron aralioides HOM05D000180 ORTHO05D000099 4.2e-06 55.8 106 34.9
BcaC05g26195 Brassica carinata HOM05D000180 ORTHO05D000099 5.5e-06 55.5 145 26.2
C05p22000 Brassica napus HOM05D000180 ORTHO05D000099 5.5e-06 55.5 145 26.2
Cfa014373 Carpinus fangiana HOM05D000180 ORTHO05D000313 5.5e-06 55.5 100 33.0
Ca_08545_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 5.5e-06 55.5 125 33.6
Medtr4g122110 Medicago truncatula HOM05D000180 ORTHO05D000099 5.5e-06 55.5 100 33.0
PSO729G0280 Papaver somniferum HOM05D000180 ORTHO05D000099 5.5e-06 55.5 124 27.4
Psat7g199920 Pisum sativum HOM05D000180 ORTHO05D000099 5.5e-06 55.5 118 31.4
TAR629G0636 Trochodendron aralioides HOM05D001508 ORTHO05D001381 5.5e-06 55.5 157 28.7
BolC5t30897H Brassica oleracea HOM05D000180 ORTHO05D000099 7.2e-06 55.1 117 29.1
Carub.0008s0654 Capsella rubella HOM05D000180 ORTHO05D000099 7.2e-06 55.1 145 27.6
Carub.0008s0655 Capsella rubella HOM05D000180 ORTHO05D000099 7.2e-06 55.1 145 27.6
FAN06G0338 Fragaria x ananassa HOM05D000180 ORTHO05D000099 7.2e-06 55.1 125 31.2
FAN06G1956 Fragaria x ananassa HOM05D000180 ORTHO05D000099 7.2e-06 55.1 125 31.2
Lj1g0027716 Lotus japonicus HOM05D000180 ORTHO05D000099 7.2e-06 55.1 163 28.8
Medtr7g093870 Medicago truncatula HOM05D000180 ORTHO05D000099 7.2e-06 55.1 128 28.9
Phvul.001G145800 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 7.2e-06 55.1 158 27.2
Sc13g0002480 Simmondsia chinensis HOM05D000180 ORTHO05D000099 7.2e-06 55.1 120 32.5
unitig_88.g27630 Utricularia gibba HOM05D001508 ORTHO05D001381 7.2e-06 55.1 137 29.9
CsaV3_2G015830 Cucumis sativus L. HOM05D000180 ORTHO05D000099 9.4e-06 54.7 117 30.8
DCAR_019269 Daucus carota HOM05D000201 ORTHO05D000490 9.4e-06 54.7 89 37.1
Gorai.002G003700 Gossypium raimondii HOM05D000018 ORTHO05D001172 9.4e-06 54.7 119 30.3
Lj1g0004629 Lotus japonicus HOM05D000180 ORTHO05D000099 9.4e-06 54.7 192 28.1
Medtr7g093820 Medicago truncatula HOM05D000180 ORTHO05D000099 9.4e-06 54.7 141 29.8
Psat7g201320 Pisum sativum HOM05D000180 ORTHO05D000099 9.4e-06 54.7 117 30.8


User provided reference genes

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